Factsheet for VIT_04s0023g00950.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g01800.t01	Wine grape	nucleus	41.45	31.27
VIT_00s1291g00010.t01	Wine grape	nucleus	38.07	30.8
VIT_00s0772g00020.t01	Wine grape	nucleus	33.98	30.79
VIT_11s0052g00840.t01	Wine grape	nucleus	36.87	30.54
VIT_09s0002g01370.t01	Wine grape	nucleus	37.59	28.94
VIT_11s0037g00870.t01	Wine grape	plastid	21.93	26.22
VIT_01s0026g01690.t01	Wine grape	nucleus	20.96	26.13
VIT_18s0001g08610.t01	Wine grape	nucleus	41.69	25.67
VIT_07s0151g00440.t01	Wine grape	nucleus	40.72	24.93
VIT_09s0018g01650.t01	Wine grape	plastid	21.2	24.38
VIT_14s0108g00050.t01	Wine grape	nucleus	21.93	22.52
VIT_13s0047g00340.t01	Wine grape	plastid	19.76	22.1

Protein Annotations

EntrezGene:100241060	wikigene:100241060	MapMan:15.5.7.3	Gene3D:3.30.730.10	EMBL:AM468464	InterPro:AP2-like_transcript_factor
InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	ProteinID:CAN63760	ProteinID:CAN63760.1	ProteinID:CCB44497	ProteinID:CCB44497.1
InterPro:DNA-bd_dom_sf	UniProt:F6GX11	EMBL:FN594959	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	EntrezGene:LOC100241060	wikigene:LOC100241060
PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF72	SMART:SM00380
SUPFAM:SSF54171	UniParc:UPI000210A02D	ArrayExpress:VIT_04s0023g00950	EnsemblPlantsGene:VIT_04s0023g00950	EnsemblPlants:VIT_04s0023g00950.t01	RefSeq:XP_002269840
RefSeq:XP_002269840.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:+:17380960..17384755

Molecular Weight (calculated)

44933.8 Da

IEP (calculated)

7.891

GRAVY (calculated)

-0.810

Length

415 amino acids

Sequence
(BLAST)

001: MASMNNWLGF SLSPRELPPQ PENHSQNSVS RLGFNSDEIS GTDVSGECFD LTSDSTAPSL NLPPPFGILE AFNRNNQPQD WNMKGLGMNS DTNYKTTTSE
101: LSMLMGSSCS SHHNLENQEP KLENFLGCRS FADHEQKLQG CNSIAAAAYD SSADYMFPNC SLQLPSEPVD TPTPRGGGGG STTVNNSSIG LSMIKTWLRN
201: QPAPTHQDNN KSTDTGPVGG AAAGNLPNAQ TLSLSMSTGS QSSSPLPLLT ASAGGGGGSG GESSSSDNKK ATPLDSQTGA IETVPRKSID TFGQRTSIYR
301: GVTRHRWTGR YEAHLWDNSC RREGQTRKGR QGGYDKEEKA ARAYDLAALK YWGTTTTTNF PISNYEKEIE EMKHMTRQEY VASLRRKSSG FSRGASIYRG
401: VTRHHQHPRG SSRGL

Best Arabidopsis Sequence Match ( AT1G51190.1 )
(BLAST)

001: MNSNNWLAFP LSPTHSSLPP HIHSSQNSHF NLGLVNDNID NPFQNQGWNM INPHGGGGEG GEVPKVADFL GVSKSGDHHT DHNLVPYNDI HQTNASDYYF
101: QTNSLLPTVV TCASNAPNNY ELQESAHNLQ SLTLSMGSTG AAAAEVATVK ASPAETSADN SSSTTNTSGG AIVEATPRRT LETFGQRTSI YRGVTRHRWT
201: GRYEAHLWDN SCRREGQSRK GRQVYLGGYD KEEKAARAYD LAALKYWGPS TTTNFPITNY EKEVEEMKNM TRQEFVASIR RKSSGFSRGA SMYRGVTRHH
301: QHGRWQARIG RVAGNKDLYL GTFSTEEEAA EAYDIAAIKF RGLNAVTNFE INRYDVKAIL ESNTLPIGGG AAKRLKEAQA LESSRKREEM IALGSNFHQY
401: GAASGSSSVA SSSRLQLQPY PLSIQQPFEH LHHHQPLLTL QNNNDISQYH DSFSYIQTQL HLHQQQTNNY LQSSSHTSQL YNAYLQSNPG LLHGFVSDNN
501: NTSGFLGNNG IGIGSSSTVG SSAEEEFPAV KVDYDMPPSG GATGYGGWNS GESAQGSNPG GVFTMWNE

Arabidopsis Description

PLT2AP2-like ethylene-responsive transcription factor PLT2 [Source:UniProtKB/Swiss-Prot;Acc:Q5YGP7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.