Factsheet for VIT_18s0001g08610.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG88628	Soybean	nucleus	49.55	68.87
VIT_07s0151g00440.t01	Wine grape	nucleus	67.95	67.55
KRH15454	Soybean	nucleus	59.5	66.94
Os07t0124700-01	Rice	nucleus	30.42	61.93
TraesCS2B01G268100.2	Wheat	nucleus	49.26	55.33
TraesCS2D01G256600.2	Wheat	nucleus	49.11	55.17
TraesCS2A01G267600.2	Wheat	nucleus	49.11	55.07
Zm00001d018731_P001	Maize	nucleus	47.77	52.53
Zm00001d007840_P001	Maize	nucleus	46.14	51.83
TraesCS5B01G410200.1	Wheat	nucleus	46.74	50.16
TraesCS5D01G415500.1	Wheat	nucleus	46.44	50.0
EER93382	Sorghum	nucleus	47.92	49.85
Zm00001d034204_P001	Maize	nucleus	48.96	49.33
TraesCS5A01G405400.1	Wheat	nucleus	45.85	49.13
KXG34322	Sorghum	nucleus	49.55	49.05
HORVU5Hr1G098450.2	Barley	nucleus	44.96	48.02
VIT_09s0002g01370.t01	Wine grape	nucleus	35.16	43.97
VIT_11s0052g00840.t01	Wine grape	nucleus	31.6	42.52
VIT_00s0772g00020.t01	Wine grape	nucleus	28.64	42.14
VIT_11s0037g00870.t01	Wine grape	plastid	21.66	42.07
VIT_04s0023g00950.t01	Wine grape	nucleus	25.67	41.69
VIT_09s0018g01650.t01	Wine grape	plastid	21.51	40.17
VIT_06s0004g01800.t01	Wine grape	nucleus	32.49	39.82
VIT_00s1291g00010.t01	Wine grape	nucleus	30.27	39.77
VIT_01s0026g01690.t01	Wine grape	nucleus	19.14	38.74
VIT_13s0047g00340.t01	Wine grape	plastid	19.58	35.58
VIT_14s0108g00050.t01	Wine grape	nucleus	20.33	33.91

Protein Annotations

EntrezGene:100252316	wikigene:100252316	MapMan:15.5.7.3	Gene3D:3.30.730.10	EMBL:AM430199	InterPro:AP2-like_transcript_factor
InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf	ProteinID:CAN60401	ProteinID:CAN60401.1	ProteinID:CCB45724	ProteinID:CCB45724.1
ncoils:Coil	InterPro:DNA-bd_dom_sf	UniProt:F6H173	EMBL:FN595227	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR001471	InterPro:IPR036955	EntrezGene:LOC100252316
wikigene:LOC100252316	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032	PANTHER:PTHR32467	PANTHER:PTHR32467:SF47
SMART:SM00380	SUPFAM:SSF54171	TIGR:TC58721	UniParc:UPI0002109A59	ArrayExpress:VIT_18s0001g08610	EnsemblPlantsGene:VIT_18s0001g08610
EnsemblPlants:VIT_18s0001g08610.t01	RefSeq:XP_002285467	RefSeq:XP_002285467.2	SEG:seg	:	:

Description

No Description!

Coordinates

chr18:-:7050289..7054311

Molecular Weight (calculated)

74137.7 Da

IEP (calculated)

7.186

GRAVY (calculated)

-0.646

Length

674 amino acids

Sequence
(BLAST)

001: MKSMNDNNNG SNNNWLGFSL SPHMKMEVAS DPQYHHQTQP AAAAVSSAVP TSFFLSPHLN SSAIYYGVGE NGAFHSHLSV MPLKSDGSLC IMEALSRSQQ
101: EGMVPTSSPK LEDFLGSATM ATHQYGGHER EAMALSLDSM YYHQNAEPET SRQHSLNLLQ ESFRQQGQQQ IPVQHHPYFT GLACNGIYQN PLEEETKETQ
201: LADCHTQIPP MGEDGMPCLK NWVARHYSTH HALEQQMNNS IVDDGGAPGS IGAMGCGDLQ SLSLSMSPGS QSSCVTAPRQ ISPTGAECVA METKKRGSGK
301: VAQKQPVHRK SIDTFGQRTS QYRGVTRHRW TGRYEAHLWD NSCKKEGQTR KGRQVYLGGY DMEEKAARAY DLAALKYWGP STHINFPLEN YQEELEEMKN
401: MSRQEYVAHL RRKSSGFSRG ASMYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDVAAIK FRGVNAVTNF DITRYDVERI TASNTLIAGE
501: LAKRSKGKEP SREAIDYNPP QNSGEAIQSE SNNGNGTDWK MALYQSPQQQ PSSCVESLEQ KPMSIGGYRT TSFSMALQDL IGIDSVNTSQ PIGDESTKLG
601: THFSNPSSLV TSLSSSREAS PDKTGPAMLF AKPPLASKLM GPASALSSWI PTSQLRTAAV SMAHLPLFAA WNDT

Best Arabidopsis Sequence Match ( AT4G37750.1 )
(BLAST)

001: MKSFCDNDDN NHSNTTNLLG FSLSSNMMKM GGRGGREAIY SSSTSSAATS SSSVPPQLVV GDNTSNFGVC YGSNPNGGIY SHMSVMPLRS DGSLCLMEAL
101: NRSSHSNHHQ DSSPKVEDFF GTHHNNTSHK EAMDLSLDSL FYNTTHEPNT TTNFQEFFSF PQTRNHEEET RNYGNDPSLT HGGSFNVGVY GEFQQSLSLS
201: MSPGSQSSCI TGSHHHQQNQ NQNHQSQNHQ QISEALVETS VGFETTTMAA AKKKRGQEDV VVVGQKQIVH RKSIDTFGQR TSQYRGVTRH RWTGRYEAHL
301: WDNSFKKEGH SRKGRQVYLG GYDMEEKAAR AYDLAALKYW GPSTHTNFSA ENYQKEIEDM KNMTRQEYVA HLRRKSSGFS RGASIYRGVT RHHQHGRWQA
401: RIGRVAGNKD LYLGTFGTQE EAAEAYDVAA IKFRGTNAVT NFDITRYDVD RIMSSNTLLS GELARRNNNS IVVRNTEDQT ALNAVVEGGS NKEVSTPERL
501: LSFPAIFALP QVNQKMFGSN MGGNMSPWTS NPNAELKTVA LTLPQMPVFA AWADS

Arabidopsis Description

ANTAP2-like ethylene-responsive transcription factor ANT [Source:UniProtKB/Swiss-Prot;Acc:Q38914]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.