Factsheet for Zm00001d042492_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG33917	Sorghum	nucleus	91.78	92.18
Os01t0899800-01	Rice	nucleus	72.52	73.67
HORVU3Hr1G089160.2	Barley	nucleus	61.9	66.21
TraesCS3A01G395500.1	Wheat	nucleus	64.31	64.67
TraesCS3D01G389100.1	Wheat	nucleus	65.16	61.5
TraesCS3B01G427300.1	Wheat	nucleus, plastid	64.73	61.01
GSMUA_Achr5P25620_001	Banana	nucleus	39.66	51.47
GSMUA_Achr8P09110_001	Banana	nucleus	41.64	49.49
Zm00001d046913_P001	Maize	nucleus	31.3	45.57
Zm00001d017207_P001	Maize	nucleus	41.5	43.34
Zm00001d028919_P001	Maize	extracellular, nucleus	23.94	39.76
Zm00001d027878_P002	Maize	nucleus	30.31	39.63
Zm00001d018731_P001	Maize	nucleus	30.59	35.24
Zm00001d007840_P001	Maize	nucleus	29.75	35.0
Zm00001d020540_P002	Maize	plastid	19.97	34.31
Zm00001d048004_P001	Maize	nucleus	31.44	33.74
Zm00001d034204_P001	Maize	nucleus	31.3	33.03
Zm00001d005016_P005	Maize	plastid	18.41	32.66
Zm00001d011134_P001	Maize	nucleus	18.98	31.9
Zm00001d032144_P001	Maize	nucleus	18.13	31.6
Zm00001d002025_P001	Maize	endoplasmic reticulum, golgi, mitochondrion, nucleus	28.75	28.51
Zm00001d045378_P001	Maize	nucleus	19.55	28.11
Zm00001d043116_P002	Maize	nucleus	17.42	26.62
Zm00001d052405_P002	Maize	plastid	15.58	25.29

Protein Annotations

MapMan:15.5.7.3	Gene3D:3.30.730.10	UniProt:A0A1D6N4F3	InterPro:AP2-like_transcript_factor	InterPro:AP2/ERF_dom	InterPro:AP2/ERF_dom_sf
InterPro:DNA-bd_dom_sf	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR001471	InterPro:IPR036955	ProteinID:ONM35533.1	PFAM:PF00847	PRINTS:PR00367	PFscan:PS51032
PANTHER:PTHR32467	PANTHER:PTHR32467:SF42	SMART:SM00380	SUPFAM:SSF54171	UniParc:UPI00022196EA	EnsemblPlantsGene:Zm00001d042492
EnsemblPlants:Zm00001d042492_P001	EnsemblPlants:Zm00001d042492_T001	SEG:seg	:	:	:

Description

AP2-EREBP-transcription factor 53AP2-like ethylene-responsive transcription factor BBM

Coordinates

chr3:+:169433935..169438362

Molecular Weight (calculated)

73220.7 Da

IEP (calculated)

6.912

GRAVY (calculated)

-0.288

Length

706 amino acids

Sequence
(BLAST)

001: MATVNNWLAF SLSPQELPPS QTTDSTLISA ATADHVSGDV CFNIPQDWSM RGSELSALVA EPKLEDFLGG ISFSEQHHKS NCNLIPSTSS TVCYASSAAS
101: TGYHHQLYQP TSSALHFADS VMVASSAGVH DGGSMLSAAA ANGVAGAASA NGGGIGLSMI KNWLRSQPAP MQPRAAAAEG AQGLSLSMNM AGTTQGAAGM
201: PLLAGERARA PESVSTSAQG GAVVVTAPKE DSGGSGVAGA LVAVSTDTGG SGGASADNTA RKTVDTFGQR TSIYRGVTRH RWTGRYEAHL WDNSCRREGQ
301: TRKGRQGGYD KEEKAARAYD LAALKYWGAT TTTNFPVSNY EKELEDMKHM TRQEFVASLR RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL
401: GTFSTQEEAA EAYDIAAIKF RGLNAVTNFD MSRYDVKSIL DSSALPIGSA AKRLKEAEAA ASAQHHHAGV VSYDVGRIAS QLGDGGALAA AYGAHYHGAA
501: WPTIAFQPGA ATTGLYHPYA QQPMRGGGWC KQEQDHAVIA AAHSLQDLHH LNLGAAGAHD FFSAGQQAAA AAAMHGLASI DSASLEHSTG SNSVVYNGGV
601: GDSNGASAVG SGGGYMMPMS AAGATTTSAM VSHEQMHARA YDEAKQAAQM GYESYLVNAE NNGGGRMSAW GTVVSAAAAA AASSNDNIAA DVGHGGAQLF
701: SVWNDT

Best Arabidopsis Sequence Match ( AT3G20840.1 )
(BLAST)

001: MNSNNWLGFP LSPNNSSLPP HEYNLGLVSD HMDNPFQTQE WNMINPHGGG GDEGGEVPKV ADFLGVSKPD ENQSNHLVAY NDSDYYFHTN SLMPSVQSND
101: VVVAACDSNT PNNSSYHELQ ESAHNLQSLT LSMGTTAGNN VVDKASPSET TGDNASGGAL AVVETATPRR ALDTFGQRTS IYRGVTRHRW TGRYEAHLWD
201: NSCRREGQSR KGRQVYLGGY DKEDKAARSY DLAALKYWGP STTTNFPITN YEKEVEEMKH MTRQEFVAAI RRKSSGFSRG ASMYRGVTRH HQHGRWQARI
301: GRVAGNKDLY LGTFSTEEEA AEAYDIAAIK FRGLNAVTNF EINRYDVKAI LESSTLPIGG GAAKRLKEAQ ALESSRKREA EMIALGSSFQ YGGGSSTGSG
401: STSSRLQLQP YPLSIQQPLE PFLSLQNNDI SHYNNNNAHD SSSFNHHSYI QTQLHLHQQT NNYLQQQSSQ NSQQLYNAYL HSNPALLHGL VSTSIVDNNN
501: NNGGSSGSYN TAAFLGNHGI GIGSSSTVGS TEEFPTVKTD YDMPSSDGTG GYSGWTSESV QGSNPGGVFT MWNE

Arabidopsis Description

PLT1AP2-like ethylene-responsive transcription factor PLT1 [Source:UniProtKB/Swiss-Prot;Acc:Q5YGP8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.