CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73800	Canola	nucleus	28.26	32.77
CDY35101	Canola	nucleus	40.58	26.92
CDY55883	Canola	nucleus	39.86	26.32
CDY00800	Canola	nucleus	38.41	24.31
CDY15424	Canola	nucleus	36.96	23.08
CDY24243	Canola	nucleus	39.13	22.88
PGSC0003DMT400089342	Potato	nucleus	39.86	22.82
CDY10182	Canola	nucleus	41.3	22.8
CDY43399	Canola	nucleus	39.13	22.78
CDY47723	Canola	nucleus	41.3	22.62
CDX79305	Canola	nucleus	39.86	22.27
PGSC0003DMT400029235	Potato	nucleus	37.68	21.76
CDX88513	Canola	nucleus	42.03	21.48
Solyc10g005550.1.1	Tomato	nucleus	37.68	21.4
CDX87403	Canola	nucleus	41.3	21.11
CDY70982	Canola	nucleus	38.41	20.95
AT1G16490.1	Thale cress	nucleus	41.3	20.8
CDY57089	Canola	nucleus	37.68	20.8
CDX84795	Canola	nucleus	36.96	20.73
CDY23952	Canola	nucleus	36.96	20.73
CDX68004	Canola	nucleus	39.86	20.6
CDX81764	Canola	nucleus	40.58	20.07
CDY51002	Canola	nucleus	39.86	19.71
CDX69310	Canola	nucleus	9.42	19.4
CDY35519	Canola	nucleus	34.78	19.12
CDX92979	Canola	nucleus	36.96	18.82
CDY10506	Canola	nucleus	39.86	18.39
CDY42408	Canola	nucleus	39.13	18.06
CDY08989	Canola	nucleus	34.06	17.8
CDX85074	Canola	nucleus	36.23	17.54
CDX77536	Canola	nucleus	36.23	17.54
KRH13720	Soybean	nucleus	39.13	15.65
VIT_19s0085g00050.t01	Wine grape	nucleus	39.13	14.84
KRH43737	Soybean	nucleus	39.86	14.25
CDY15425	Canola	nucleus	2.9	3.74
CDX73801	Canola	nucleus	1.45	2.99

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:A0A078HBG2	UniProt:A0A078HBG2	EnsemblPlants:CDY35097	ProteinID:CDY35097
ProteinID:CDY35097.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00057970001
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF883	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0004EDD964	SEG:seg

Description

BnaA06g11070DBnaA06g11070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HBG2]

Coordinates

chrLK032346:-:193915..195967

Molecular Weight (calculated)

16091.7 Da

IEP (calculated)

10.615

GRAVY (calculated)

-0.471

Length

138 amino acids

Sequence
(BLAST)

001: MGKEERHVVT KPKSLPLNKL VIDKSCRLQW INYLRPDVKR GNFSVEEEET ITELHQSIEA SMWSKIASKL PGRTYKVIKN AWNTGLTIHV QVKQTQGRLY
101: FFTSLKSNEL QSKFSNNNYK KIISLIKIMK KTSIYFIA

Best Arabidopsis Sequence Match ( AT1G16490.1 )
(BLAST)

001: MGKGRAPCCD KTKVKRGPWS HDEDLKLISF IHKNGHENWR SLPKQAGLLR CGKSCRLRWI NYLRPDVKRG NFSAEEEDTI IKLHQSFGNK WSKIASKLPG
101: RTDNEIKNVW HTHLKKRLSS ETNLNADEAG SKGSLNEEEN SQESSPNASM SFAGSNISSK DDDAQISQMF EHILTYSEFT GMLQEVDKPE LLEMPFDLDP
201: DIWSFIDGSD SFQQPENRAL QESEEDEVDK WFKHLESELG LEENDNQQQQ QQHKQGTEDE HSSSLLESYE LLIH

Arabidopsis Description

MYB58Transcription factor MYB58 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA47]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.