CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08989	Canola	nucleus	93.23	88.64
Bra023742.1-P	Field mustard	nucleus	97.21	86.83
CDX92979	Canola	nucleus	84.86	78.6
AT3G23250.1	Thale cress	nucleus	85.66	75.44
CDX85074	Canola	nucleus	84.86	74.74
CDX77536	Canola	nucleus	84.46	74.39
CDX69310	Canola	nucleus	15.94	59.7
CDX73800	Canola	nucleus	25.1	52.94
CDY15424	Canola	nucleus	44.62	50.68
CDY57089	Canola	nucleus	47.81	48.0
CDX84795	Canola	nucleus	45.82	46.75
CDY23952	Canola	nucleus	45.42	46.34
CDY10182	Canola	nucleus	45.82	46.0
CDY70982	Canola	nucleus	46.22	45.85
CDY47723	Canola	nucleus	45.82	45.63
CDY55883	Canola	nucleus	33.47	40.19
CDY35101	Canola	nucleus	33.07	39.9
CDX79305	Canola	nucleus	38.25	38.87
CDY43399	Canola	nucleus	35.86	37.97
CDY24243	Canola	nucleus	35.06	37.29
CDY00800	Canola	nucleus	32.27	37.16
CDX81764	Canola	nucleus	40.64	36.56
CDY51002	Canola	nucleus	40.24	36.2
CDX68004	Canola	nucleus	38.25	35.96
CDX88513	Canola	nucleus	38.65	35.93
CDX87403	Canola	nucleus	38.25	35.56
CDY35097	Canola	nucleus	19.12	34.78
CDY42408	Canola	nucleus	36.26	30.43
CDY10506	Canola	nucleus	36.26	30.43
CDY15425	Canola	nucleus	8.37	19.63
CDX73801	Canola	nucleus	0.8	2.99

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.1	GO:A0A078HDN8	UniProt:A0A078HDN8	EnsemblPlants:CDY35519	ProteinID:CDY35519
ProteinID:CDY35519.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	EnsemblPlantsGene:GSBRNA2T00058561001
InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR10641
PANTHER:PTHR10641:SF695	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0004EE509D	SEG:seg

Description

BnaA01g23930DBnaA01g23930D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HDN8]

Coordinates

chrLK032353:+:324241..325627

Molecular Weight (calculated)

28528.1 Da

IEP (calculated)

5.831

GRAVY (calculated)

-0.867

Length

251 amino acids

Sequence
(BLAST)

001: MGRAPCCEKM GLNRGPWTPE EDQILVSFIH QHGHSNWRAL PKQAGLLRCG KSCRLRWMNY LKPDIKRGNF TQAEEDAIIS LHQILGNRWS AIAAKLPGRT
101: DNEIKNVWHT HLKKRLEDYQ PTKPKTSNKK KSTKPKSQSV PAKSKSTKTE SELASSSNPS FESLFSASPS ASDEVSSETF TSHEEDIDES FWNETLYSQD
201: EENHTSNLDE LQQEFQHLDS VGNEMIFDSE MDFWFDVLPR SGGEQDLLAG L

Best Arabidopsis Sequence Match ( AT3G23250.1 )
(BLAST)

001: MGRAPCCEKM GLKRGPWTPE EDQILVSFIL NHGHSNWRAL PKQAGLLRCG KSCRLRWMNY LKPDIKRGNF TKEEEDAIIS LHQILGNRWS AIAAKLPGRT
101: DNEIKNVWHT HLKKRLEDYQ PAKPKTSNKK KGTKPKSESV ITSSNSTRSE SELADSSNPS GESLFSTSPS TSEVSSMTLI SHDGYSNEIN MDNKPGDIST
201: IDQECVSFET FGADIDESFW KETLYSQDEH NYVSNDLEVA GLVEIQQEFQ NLGSANNEMI FDSEMDFWFD VLARTGGEQD LLAGL

Arabidopsis Description

MYB15Transcription factor MYB15 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTC4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.