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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY55883 Canola nucleus 97.6 97.13
CDX69310 Canola nucleus 26.44 82.09
Bra026048.1-P Field mustard nucleus 99.52 73.14
AT1G16490.1 Thale cress nucleus 75.0 56.93
CDX73800 Canola nucleus 31.73 55.46
CDX81764 Canola nucleus 72.6 54.12
CDY51002 Canola nucleus 72.6 54.12
CDX79305 Canola nucleus 62.98 53.04
CDX88513 Canola nucleus 67.31 51.85
CDX87403 Canola nucleus 66.35 51.11
CDX68004 Canola nucleus 65.38 50.94
PGSC0003DMT400029235 Potato nucleus 46.63 40.59
CDY35097 Canola nucleus 26.92 40.58
Solyc10g005550.1.1 Tomato nucleus 46.63 39.92
PGSC0003DMT400089342 Potato nucleus 45.67 39.42
CDY15424 Canola nucleus 39.42 37.1
CDX84795 Canola nucleus 42.31 35.77
CDY23952 Canola nucleus 42.31 35.77
CDY57089 Canola nucleus 42.31 35.2
CDY10182 Canola nucleus 41.83 34.8
KRH13720 Soybean nucleus 57.69 34.78
CDY47723 Canola nucleus 41.83 34.52
CDY24243 Canola nucleus 38.46 33.9
VIT_19s0085g00050.t01 Wine grape nucleus 59.13 33.79
CDY43399 Canola nucleus 38.46 33.76
CDY70982 Canola nucleus 40.87 33.6
CDY00800 Canola nucleus 35.1 33.49
CDY42408 Canola nucleus 47.6 33.11
CDY35519 Canola nucleus 39.9 33.07
CDY10506 Canola nucleus 47.12 32.78
CDY08989 Canola nucleus 40.38 31.82
CDX77536 Canola nucleus 42.31 30.88
KRH43737 Soybean nucleus 57.21 30.83
CDX92979 Canola nucleus 39.9 30.63
CDX85074 Canola nucleus 41.83 30.53
CDY15425 Canola nucleus 6.25 12.15
CDX73801 Canola nucleus 2.4 7.46
Protein Annotations
EnsemblPlants:CDY35101EnsemblPlantsGene:GSBRNA2T00057976001Gene3D:1.10.10.60GO:A0A078HBJ1GO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0005488InterPro:Homeobox-like_sfInterPro:IPR017930InterPro:Myb_domInterPro:SANT/Myb
PANTHER:PTHR10641PANTHER:PTHR10641:SF462PFAM:PF00249PFscan:PS51294ProteinID:CDY35101ProteinID:CDY35101.1
SMART:SM00717SUPFAM:SSF46689UniParc:UPI0004EEF7A7UniProt:A0A078HBJ1MapMan:15.5.2.1:
Description
BnaA06g11110DBnaA06g11110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HBJ1]
Coordinates
chrLK032346:-:215905..216937
Molecular Weight (calculated)
24171.6 Da
IEP (calculated)
7.238
GRAVY (calculated)
-0.899
Length
208 amino acids
Sequence
(BLAST)
001: MGKGRAPCCD KTKVKRGQWS YDEDLKLISF INKYGHENWR SLPEQAGLLR CGKSCRLRWI NYLRPDVKRG NFSVEEEETI IKLHQSIGSK WSKIASKLPG
101: RTDNEIKNTL QEVDKPELLE ISFGVDPEIW SFINGLDSFQ QPENSLAPRA HQDSQEDEVE KWFKHLETEL GLEENDSQQQ RSIVMLTKNH RHHHLGELRA
201: LDKPLTKP
Best Arabidopsis Sequence Match ( AT1G16490.1 )
(BLAST)
001: MGKGRAPCCD KTKVKRGPWS HDEDLKLISF IHKNGHENWR SLPKQAGLLR CGKSCRLRWI NYLRPDVKRG NFSAEEEDTI IKLHQSFGNK WSKIASKLPG
101: RTDNEIKNVW HTHLKKRLSS ETNLNADEAG SKGSLNEEEN SQESSPNASM SFAGSNISSK DDDAQISQMF EHILTYSEFT GMLQEVDKPE LLEMPFDLDP
201: DIWSFIDGSD SFQQPENRAL QESEEDEVDK WFKHLESELG LEENDNQQQQ QQHKQGTEDE HSSSLLESYE LLIH
Arabidopsis Description
MYB58Transcription factor MYB58 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA47]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.