Factsheet for VIT_15s0048g02280.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
golgi 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0048g02310.t01	Wine grape	cytosol	18.2	56.36
GSMUA_Achr11P...	Banana	cytosol	14.68	39.68
VIT_17s0053g00740.t01	Wine grape	nucleus	17.03	36.55
VIT_15s0048g02290.t01	Wine grape	nucleus	20.94	33.33
GSMUA_Achr2P11810_001	Banana	cytosol, mitochondrion, nucleus, plastid	18.4	32.41
VIT_19s0085g00950.t01	Wine grape	nucleus	17.22	31.32
VIT_15s0048g02320.t01	Wine grape	nucleus	20.16	29.18
VIT_15s0048g02300.t01	Wine grape	nucleus	22.31	25.97
VIT_02s0012g01040.t01	Wine grape	nucleus	18.4	25.75
VIT_06s0080g00970.t01	Wine grape	nucleus	18.98	25.0
VIT_13s0019g05230.t01	Wine grape	nucleus	17.61	20.83
VIT_15s0048g02270.t01	Wine grape	nucleus	24.46	19.9
VIT_02s0025g03020.t01	Wine grape	nucleus	24.27	19.62
GSMUA_Achr4P29170_001	Banana	nucleus	21.72	19.3
GSMUA_Achr1P03560_001	Banana	nucleus	21.33	18.99
VIT_13s0019g05240.t01	Wine grape	cytosol, nucleus, plastid	20.16	18.43
VIT_18s0001g01820.t01	Wine grape	nucleus	20.55	18.36
VIT_16s0098g00760.t01	Wine grape	mitochondrion	22.11	17.55
OQU79937	Sorghum	nucleus	22.7	17.47
VIT_04s0079g00280.t01	Wine grape	cytosol, nucleus, plasma membrane	22.7	17.37
Zm00001d049540_P002	Maize	cytosol	22.31	17.25
Zm00001d024543_P001	Maize	nucleus	21.53	16.57
TraesCS7B01G187600.1	Wheat	nucleus	21.33	15.55
TraesCS7A01G299600.3	Wheat	nucleus	21.33	15.55
Os08t0157900-01	Rice	nucleus, plasma membrane	22.11	15.5
TraesCS7D01G295100.1	Wheat	nucleus	20.94	15.4
HORVU7Hr1G070780.5	Barley	nucleus	21.14	15.34
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane	21.92	14.76
VIT_04s0044g01220.t01	Wine grape	nucleus	16.05	14.64

Protein Annotations

EntrezGene:100257516	wikigene:100257516	EntrezGene:100855128	wikigene:100855128	MapMan:15.5.17	Gene3D:3.30.310.150
ProteinID:CCB61321	ProteinID:CCB61321.1	UniProt:F6I304	EMBL:FN596739	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	InterPro:IPR003441	InterPro:IPR036093	EntrezGene:LOC100257516
wikigene:LOC100257516	EntrezGene:LOC100855128	wikigene:LOC100855128	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365
PFscan:PS51005	PANTHER:PTHR31989	PANTHER:PTHR31989:SF57	SUPFAM:SSF101941	TMHMM:TMhelix	UniParc:UPI0001984E46
ArrayExpress:VIT_15s0048g02280	EnsemblPlantsGene:VIT_15s0048g02280	EnsemblPlants:VIT_15s0048g02280.t01	unigene:Vvi.1342	RefSeq:XP_002268858	RefSeq:XP_002268858.2
RefSeq:XP_003633927	RefSeq:XP_003633927.1	RefSeq:XP_010661536.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr15:+:16457415..16460100

Molecular Weight (calculated)

55617.5 Da

IEP (calculated)

5.609

GRAVY (calculated)

-0.407

Length

511 amino acids

Sequence
(BLAST)

001: MSVDMINDIL KLLPVGCGFR PTDEELVNHY LKLKIQGKDS EVQIIPVVDV CKSEPWELPD LSRIKTADPD WFFFSPVDLK YSNGSHVNRQ TEAGFWKPTG
101: QDREVKSGTN KIGTKKSLVF HKGRGRAAVR TNWVIHQYRT DIAGLPANRA YVLCHLMKKT DENTGPDEAV AGSGNGLANN MTLGAGLSHH ASDIVSDIGN
201: YQVEEMILDG DPELEGLLHE PTIHPLDYDL FHHTEQGLDL DLSSSSGYNN SCGSMQFQDE DDAEFVDGLF IDPDGYPCGG LSDERSSAVY GSIGRLSARP
301: QSPLKGAYVK GSRSATYTEV LHVKPSLSQE ASSRVVSSSK ECMQSPMAQQ QHSASGSFSI NQQRLANSVA QGVAPKSVKL EGNDLNNEIL LAKLAKLSGS
401: MTKSEENSVS IKAKDRAEYG SATDLLQSKN PIRESKKDCE VPEKANPKLS SMTRLNEPVG STQKGSFNSP ETTSASHEPS SSPAQLVNFL TGIILFVILI
501: VVMVLDFIAK V

Best Arabidopsis Sequence Match ( AT3G49530.1 )
(BLAST)

001: MNQNLHVLSM DSLPVGLRFR PTDEELIRYY LRRKINGHDD DVKAIREIDI CKWEPWDLPD FSVIKTKDSE WLYFCPLDRK YPSGSRQNRA TVAGYWKATG
101: KDRKIKSGKT NIIGVKRTLV FHAGRAPRGT RTNWIIHEYR ATEDDLSGTN PGQSPFVICK LFKKEELVLG EEDSKSDEVE EPAVSSPTVE VTKSEVSEVI
201: KTEDVKRHDI AESSLVISGD SHSDACDEAT TAELVDFKWY PELESLDFTL FSPLHSQVQS ELGSSYNTFQ PGSSNFSGNN NNSFQIQTQY GTNEVDTYIS
301: DFLDSILKSP DEDPEKHKYV LQSGFDVVAP DQIAQVCQQG SAVDMSNDVS VTGIQIKSRQ AQPSGYTNDY IAQGNGPRRL RLQSNFNGIN TKNPELQAIK
401: REAEDTVGES IKKRCGKLMR SKNVTGFVFK KITSVKCSYG GLFRAAVVAV VFLMSVCSLT VDFRASAVS

Arabidopsis Description

NAC062NAC domain-containing protein 62 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCK6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.