Factsheet for VIT_15s0048g02300.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0048g02320.t01	Wine grape	nucleus	63.55	79.04
VIT_15s0048g02310.t01	Wine grape	cytosol	25.74	68.48
VIT_15s0048g02290.t01	Wine grape	nucleus	41.69	57.01
VIT_15s0048g02270.t01	Wine grape	nucleus	60.14	42.04
GSMUA_Achr11P...	Banana	cytosol	16.86	39.15
VIT_17s0053g00740.t01	Wine grape	nucleus	17.08	31.51
GSMUA_Achr2P11810_001	Banana	cytosol, mitochondrion, nucleus, plastid	19.36	29.31
VIT_19s0085g00950.t01	Wine grape	nucleus	18.0	28.11
VIT_02s0012g01040.t01	Wine grape	nucleus	19.13	23.01
VIT_15s0048g02280.t01	Wine grape	golgi, nucleus, plasma membrane	25.97	22.31
VIT_06s0080g00970.t01	Wine grape	nucleus	19.59	22.16
VIT_02s0025g03020.t01	Wine grape	nucleus	31.44	21.84
VIT_13s0019g05230.t01	Wine grape	nucleus	18.22	18.52
VIT_16s0098g00760.t01	Wine grape	mitochondrion	26.88	18.32
Zm00001d049540_P002	Maize	cytosol	27.56	18.31
GSMUA_Achr1P03560_001	Banana	nucleus	23.92	18.29
OQU79937	Sorghum	nucleus	27.56	18.22
GSMUA_Achr4P29170_001	Banana	nucleus	22.1	16.87
Zm00001d024543_P001	Maize	nucleus	25.51	16.87
VIT_13s0019g05240.t01	Wine grape	cytosol, nucleus, plastid	20.73	16.28
Os08t0157900-01	Rice	nucleus, plasma membrane	26.2	15.78
VIT_18s0001g01820.t01	Wine grape	nucleus	19.82	15.21
HORVU7Hr1G070780.5	Barley	nucleus	24.37	15.2
TraesCS7B01G187600.1	Wheat	nucleus	24.15	15.12
TraesCS7D01G295100.1	Wheat	nucleus	23.92	15.11
TraesCS7A01G299600.3	Wheat	nucleus	23.92	14.98
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane	25.51	14.76
VIT_04s0079g00280.t01	Wine grape	cytosol, nucleus, plasma membrane	22.1	14.52
VIT_04s0044g01220.t01	Wine grape	nucleus	16.4	12.86

Protein Annotations

EntrezGene:100262652	wikigene:100262652	EntrezGene:104881856	MapMan:15.5.17	Gene3D:3.30.310.150	ProteinID:CCB61319
ProteinID:CCB61319.1	UniProt:F6I302	EMBL:FN596739	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	InterPro:IPR003441	InterPro:IPR036093	EntrezGene:LOC100262652	wikigene:LOC100262652
InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR31989	PANTHER:PTHR31989:SF57
SUPFAM:SSF101941	TIGR:TC66122	UniParc:UPI0001984E44	ArrayExpress:VIT_15s0048g02300	EnsemblPlantsGene:VIT_15s0048g02300	EnsemblPlants:VIT_15s0048g02300.t01
unigene:Vvi.25424	RefSeq:XP_002268822	RefSeq:XP_002268822.2	RefSeq:XP_010661528.1	SEG:seg	:

Description

No Description!

Coordinates

chr15:+:16465782..16469436

Molecular Weight (calculated)

48766.1 Da

IEP (calculated)

4.923

GRAVY (calculated)

-0.509

Length

439 amino acids

Sequence
(BLAST)

001: MSVGETIGAI LETLPVGFRF HPTDEELVDR HLKPKILGMD SQVEIIPEVD ICKWEPWELP GFSVLQTDDL EWFFFSPLHK KYQNGSQFKR ATKAGYWKPT
101: GLGRDILSRT NKEVIGTRKT LNFYEGRGRA AVLTNWVIYQ YQYHRSDIAS LPSKRAYVLC RLKRKKDKKT GSYIPTPDEA VAGTGIHLNG PANNMTLDAG
201: PSHHFSDIAS DIRNYQVEEM TSDEDPQLPG LLNDIPFTPL DSDWFSDTEQ GLDLDLPSPS GFNNSYGNMQ FEDGVDTEFA DSLIVDPDEY HCEGLTGQRI
301: SAVDSWNLNH GFVGRLSARP QSPLKGVYGK GPGSSSNTNT QVLQGFCLQA KDRAEYGSVI DLLQNKNPIR EFKKDSEVTE KANPNLSSIW NESVGMNQKG
401: SFSSPETASA SHEPSSTPGY PVNLLAGILL LVLDINANI

Best Arabidopsis Sequence Match ( AT1G33060.1 )
(BLAST)

001: MNQIKNKTLP EMTTEQALLS MEALPLGFRF RPTDEELINH YLRLKINGRD LEVRVIPEID VCKWEPWDLP GLSVIKTDDQ EWFFFCPRDR KYPSGHRSNR
101: ATDIGYWKAT GKDRTIKSKK MIIGMKKTLV FYRGRAPRGE RTNWIMHEYR ATDKELDGTG PGQNPYVLCR LFHKPSDSCD PAHCEEIEKV NFTPTTTTRC
201: SPDDTSSEMV QETATSGVHA LDRSDDTERC LSDKGNNDVK PDVSVINNTS VNHAETSRAK DRNLGKTLVE ENPLLRDVPT LHGPILSEKS YYPGQSSIGF
301: ATSHMDSMYS SDFGNCDYGL HFQDGASEQD ASLTDVLDEV FHNHNESSND RKDFVLPNMM HWPGNTRLLS TEYPFLKDSV AFVDGSAEVS GSQQFVPDIL
401: ASRWVSEQNV DSKEAVEILS STGSSRTLTP LHNNVFGQYA SSSYAAIDPF NYNVNQPEQS SFEQSHVDRN ISPSNIFEFK ARSRENQRDL DSVVDQGTAP
501: RRIRLQIEQP LTPVTNKKER DADNYEEEDE VQSAMSKVVE EEPANLSAQG TAQRRIRLQT RLRKPLITLN NTKRNSNGRE GEASHRKEKE DISSSSSWQK
601: QKKSLVQFSS VVIIVAVIVV LVEIWKESRD AKCSFLFHQL DSFKGMFT

Arabidopsis Description

NAC014NAC014 [Source:UniProtKB/TrEMBL;Acc:A0A178WRQ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.