Factsheet for VIT_02s0025g03020.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_15s0048g02310.t01	Wine grape	cytosol	14.24	54.55
GSMUA_Achr11P...	Banana	cytosol	15.82	52.91
GSMUA_Achr2P11810_001	Banana	cytosol, mitochondrion, nucleus, plastid	21.04	45.86
AT4G35580.2	Thale cress	nucleus	35.76	42.32
VIT_17s0053g00740.t01	Wine grape	nucleus	15.03	39.92
VIT_15s0048g02290.t01	Wine grape	nucleus	19.15	37.69
VIT_15s0048g02320.t01	Wine grape	nucleus	19.94	35.69
AT1G33060.2	Thale cress	nucleus	35.92	34.82
VIT_19s0085g00950.t01	Wine grape	nucleus	15.19	34.16
VIT_16s0098g00760.t01	Wine grape	mitochondrion	34.49	33.85
VIT_06s0080g00970.t01	Wine grape	nucleus	20.57	33.51
CDY26922	Canola	nucleus	33.7	33.49
Bra010193.1-P	Field mustard	nucleus	33.7	33.49
CDY66161	Canola	nucleus	33.54	33.39
GSMUA_Achr4P29170_001	Banana	nucleus	28.96	31.83
VIT_15s0048g02300.t01	Wine grape	nucleus	21.84	31.44
Zm00001d049540_P002	Maize	cytosol	31.65	30.26
OQU79937	Sorghum	nucleus	31.49	29.97
VIT_15s0048g02270.t01	Wine grape	nucleus	29.11	29.3
VIT_02s0012g01040.t01	Wine grape	nucleus	16.14	27.95
GSMUA_Achr1P03560_001	Banana	nucleus	25.32	27.87
Zm00001d024543_P001	Maize	nucleus	29.11	27.71
Os08t0157900-01	Rice	nucleus, plasma membrane	31.01	26.89
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane	32.12	26.75
TraesCS7B01G187600.1	Wheat	nucleus	28.16	25.39
TraesCS7A01G299600.3	Wheat	nucleus	28.01	25.25
HORVU7Hr1G070780.5	Barley	nucleus	27.85	25.0
TraesCS7D01G295100.1	Wheat	nucleus	27.37	24.89
VIT_15s0048g02280.t01	Wine grape	golgi, nucleus, plasma membrane	19.62	24.27
VIT_13s0019g05230.t01	Wine grape	nucleus	15.98	23.38
VIT_18s0001g01820.t01	Wine grape	nucleus	18.83	20.8
VIT_13s0019g05240.t01	Wine grape	cytosol, nucleus, plastid	17.88	20.21
VIT_04s0079g00280.t01	Wine grape	cytosol, nucleus, plasma membrane	21.36	20.21
VIT_04s0044g01220.t01	Wine grape	nucleus	14.24	16.07

Protein Annotations

EntrezGene:104877280	MapMan:15.5.17	Gene3D:3.30.310.150	ProteinID:CBI34627	ProteinID:CBI34627.3	UniProt:D7TVV2
EMBL:FN596251	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
InterPro:IPR003441	InterPro:IPR036093	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005
PANTHER:PTHR31989	PANTHER:PTHR31989:SF114	SUPFAM:SSF101941	TIGR:TC62922	TIGR:TC69910	TMHMM:TMhelix
UniParc:UPI0001982CEB	ArrayExpress:VIT_02s0025g03020	EnsemblPlantsGene:VIT_02s0025g03020	EnsemblPlants:VIT_02s0025g03020.t01	unigene:Vvi.7895	RefSeq:XP_010660382.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2:-:2570930..2576016

Molecular Weight (calculated)

70496.8 Da

IEP (calculated)

4.811

GRAVY (calculated)

-0.719

Length

632 amino acids

Sequence
(BLAST)

001: MGAVSMESLP LGFRFRPTDE ELINHYLKLK IEGRHSEVEV IRELDVCKWE PWDLPGLSMI KADDPEWFFF CPRDRKYPNG RRSNRATDAG YWKATGKDRT
101: IKSRKSSASI GMKKTLVFYK GRAPKGQRTN WIFHEYRVID SASDSSQGAY VLFRLFYKPN ERIDNPKYDE VEPTGLSPVT TKSSPGDTSS DLVQETEMSD
201: TPTGGESENF ERWLNDKSDN VTPTAPVPVE SCCNGYIPSD VEDHVAEVEE QVSEVYPPLG EDSRSYDGQI DCKVFSPESQ LYPELATAYM GSPFSSDFGD
301: GQTGLRFQDG VSEPEVCLTE FWDEIFNNHD ECSGEESNSK KNSAVGSETL VPGQVSLLPN RPHGDSHTKN GGSNSDTDTD MAQMQYDPEM RASKWSDEYI
401: VGKDHLQMDV SPGYHQPQAS FHFPEFKSGN IGALGDDSIG RDASSAVSAM ASLDALLNNL EESSTQKNHV NYGGDPVGGT GIKIRTRQPL QRQMPDNFVT
501: QGIAPRRIRL QMHKVMYASS NDEQEAQPTL KEVGEGREHP PTSDGPEKES IVGATSRSSR GLKLRLRVNR DGESEGESDN FQVKPSAFLE TVPARRGPST
601: LLVYTVSLSL VITLFLFLTG TWRYLRSYML HG

Best Arabidopsis Sequence Match ( AT1G33060.2 )
(BLAST)

001: MNQIKNKTLP EMTTEQALLS MEALPLGFRF RPTDEELINH YLRLKINGRD LEVRVIPEID VCKWEPWDLP GLSVIKTDDQ EWFFFCPRDR KYPSGHRSNR
101: ATDIGYWKAT GKDRTIKSKK MIIGMKKTLV FYRGRAPRGE RTNWIMHEYR ATDKELDGTG PGQNPYVLCR LFHKPSDSCD PAHCEEIEKV NFTPTTTTRC
201: SPDDTSSEMV QETATSGVHA LDRSDDTERC LSDKGNNDVK PDVSVINNTS VNHAETSRAK DRNLGKTLVE ENPLLRDVPT LHGPILSEKS YYPGQSSIGF
301: ATSHMDSMYS SDFGNCDYGL HFQDGASEQD ASLTDVLDEV FHNHNESSND RKDFVLPNMM HWPGNTRLLS TEYPFLKDSV AFVDGSAEVS GSQQFVPDIL
401: ASRWVSEQNV DSKEAVEILS STGSSRTLTP LHNNVFGQYA SSSYAAIDPF NYNVNQPEQS SFEQSHVDRN ISPSNIFEFK ARSRENQRDL DSVVDQGTAP
501: RRIRLQIEQP LTPVTNKKER DADNYEEEDE VQSAMSKVVE EEPANLSAQG TAQRRIRLQT RLRKPLITLN NTKRNSNGRE GEASHRKCEM QEKEDISSSS
601: SWQKQKKSLV QFSSVVIIVA VIVVLVEIWK ESRDAKCSFL FHQLDSFKGM FT

Arabidopsis Description

NAC014NAC014 [Source:UniProtKB/TrEMBL;Acc:A0A178WRQ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.