Factsheet for VIT_13s0019g05230.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41351	Canola	plastid	23.84	61.68
Solyc05g055480.2.1	Tomato	nucleus	40.97	45.85
PGSC0003DMT400060087	Potato	nucleus	40.05	44.25
VIT_17s0053g00740.t01	Wine grape	nucleus	24.07	43.7
VIT_15s0048g02310.t01	Wine grape	cytosol	16.44	43.03
PGSC0003DMT400079791	Potato	nucleus	39.81	43.0
CDY41352	Canola	nucleus	38.19	39.19
Bra034118.1-P	Field mustard	nucleus	37.73	38.72
Bra034119.1-P	Field mustard	nucleus	38.43	37.73
CDY41353	Canola	nucleus	38.43	37.64
Bra001366.1-P	Field mustard	nucleus	36.34	37.29
Solyc11g008010.1.1	Tomato	endoplasmic reticulum, plasma membrane	40.05	37.2
CDY00676	Canola	nucleus	36.81	37.15
KRG92124	Soybean	nucleus	39.81	36.99
Bra001365.1-P	Field mustard	nucleus	36.81	36.89
CDY00946	Canola	nucleus	38.19	36.59
CDY08601	Canola	nucleus, plastid	38.43	36.48
KRH34660	Soybean	plastid	39.12	36.34
Bra029844.1-P	Field mustard	nucleus, plastid	38.19	36.26
AT3G10490.2	Thale cress	nucleus	37.73	36.14
VIT_19s0085g00950.t01	Wine grape	nucleus	22.69	34.88
CDX73921	Canola	cytosol, nucleus, plastid	36.81	34.87
CDY00677	Canola	nucleus	35.88	34.83
CDX73920	Canola	nucleus	35.88	34.68
CDY70628	Canola	golgi	31.02	33.84
AT3G10480.3	Thale cress	plastid	38.19	31.37
VIT_15s0048g02290.t01	Wine grape	nucleus	20.83	28.04
VIT_02s0012g01040.t01	Wine grape	nucleus	22.69	26.85
VIT_13s0019g05240.t01	Wine grape	cytosol, nucleus, plastid	34.49	26.65
GSMUA_AchrUn_...	Banana	nucleus	25.0	22.59
TraesCS7B01G196900.1	Wheat	nucleus	33.56	22.55
VIT_06s0080g00970.t01	Wine grape	nucleus	20.14	22.42
HORVU7Hr1G060310.1	Barley	nucleus	33.33	22.29
TraesCS7D01G283800.1	Wheat	nucleus	33.33	22.29
VIT_15s0048g02320.t01	Wine grape	nucleus	18.06	22.1
Zm00001d049913_P001	Maize	plastid	31.94	21.63
Zm00001d031898_P001	Maize	plastid	33.33	21.56
Os08t0562200-02	Rice	nucleus	32.18	21.19
TraesCS6D01G390200.1	Wheat	cytosol, nucleus, peroxisome	31.25	21.03
OQU80699	Sorghum	plastid	32.41	20.9
HORVU6Hr1G093050.4	Barley	cytosol, golgi, nucleus	30.79	20.75
Os02t0822400-01	Rice	nucleus	30.32	20.73
EES06041	Sorghum	nucleus	31.02	20.55
TraesCSU01G135000.1	Wheat	nucleus	33.56	20.45
VIT_04s0044g01220.t01	Wine grape	nucleus	26.39	20.36
TraesCS6A01G406700.1	Wheat	cytosol, golgi, nucleus	30.32	20.34
GSMUA_Achr9P23580_001	Banana	plastid	27.55	20.07
Zm00001d051879_P001	Maize	nucleus	30.09	19.79
VIT_18s0001g01820.t01	Wine grape	nucleus	25.46	19.23
GSMUA_Achr9P20400_001	Banana	nucleus, peroxisome, plastid	26.16	18.83
VIT_15s0048g02300.t01	Wine grape	nucleus	18.52	18.22
GSMUA_Achr2P04010_001	Banana	plastid	26.16	17.63
VIT_15s0048g02280.t01	Wine grape	golgi, nucleus, plasma membrane	20.83	17.61
VIT_04s0079g00280.t01	Wine grape	cytosol, nucleus, plasma membrane	26.16	16.92
TraesCS6B01G451300.1	Wheat	nucleus	24.31	16.38
VIT_16s0098g00760.t01	Wine grape	mitochondrion	23.84	15.99
VIT_02s0025g03020.t01	Wine grape	nucleus	23.38	15.98
VIT_15s0048g02270.t01	Wine grape	nucleus	19.91	13.69

Protein Annotations

EntrezGene:100265122	wikigene:100265122	MapMan:15.5.17	Gene3D:3.30.310.150	EMBL:AM466875	ProteinID:CAN70405
ProteinID:CAN70405.1	ProteinID:CCB56131	ProteinID:CCB56131.1	ncoils:Coil	UniProt:F6HNB2	EMBL:FN595998
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003441	InterPro:IPR036093	EntrezGene:LOC100265122
wikigene:LOC100265122	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR31989
PANTHER:PTHR31989:SF29	SUPFAM:SSF101941	UniParc:UPI0001984809	ArrayExpress:VIT_13s0019g05230	EnsemblPlantsGene:VIT_13s0019g05230	EnsemblPlants:VIT_13s0019g05230.t01
unigene:Vvi.1271	RefSeq:XP_002265550	RefSeq:XP_002265550.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr13:+:7051159..7054469

Molecular Weight (calculated)

48335.9 Da

IEP (calculated)

6.438

GRAVY (calculated)

-0.668

Length

432 amino acids

Sequence
(BLAST)

001: MASGLPATPP TALAPGFRFH PSDEELVQYY LKRKVCGKAI AFDAIAEVDI YKKEPWNLGG ESKLKSRDME WYFFSALDRK YGNGGRVNRA TSYGYWKATG
101: NDRSVLHGSR IVGMKKTLVF HSGRAPGGQR TNWIMHEYRL VDDELVKALR DSYVVCRVFL KSEIGPPHKD RYAPFIEEEW DDDKTGSSQG GKSVDEAIVD
201: SKACIEESDL EQDAQSTTLR QSEHLKNSGS VLSLSPSERL EDCPLTCTVN KESTIFPNKR SRHDDLNPQH SDASESSLMT IQECTITKKS SPPSIFGFPL
301: VELNGKKECQ IKKELPTAPS GTFVELNGKK ESQIKKEIST APHSATVVEL KGMKESEIKN EVSRTPPATF DISDGNATLP PSYLKYITYL EDKVREMSAE
401: RERLKADMMQ AESIVNAYKS RIDITLNNGN ED

Best Arabidopsis Sequence Match ( AT3G10480.2 )
(BLAST)

001: MGRESLAVVS SPPSATAPST AVSATSLAPG FRFHPTDEEL VSYYLKRKVL GKPVRFDAIG EVDIYKHEPW DLAVFSKLKT RDQEWYFFSA LDKKYGNGAR
101: MNRATNKGYW KATGKDREIR RDIQLLGMKK TLVFHSGRAP DGLRTNWVMH EYRLVEYETE TNGSLLDAYV LCRVFHKNNI GPPSGNRYAP FMEEEWADGG
201: GALIPGIDVR VRVEALPQAN GNNQMDQEMH SASKDLININ ELPRDATPMD IEPNQQNHHE SAFKPQESNN HSGYEEDEDT LKREHAEEDE RPPSLCILNK
301: EAPLPLLQYK RRRQNESNNN SSRNTQDHCS STITTVDNTT TLISSSAAAA TNTAISALLE FSLMGISDKK ENQQKEETSP PSPIASPEEK VNDLQKEVHQ
401: MSVERETFKL EMMSAEAMIS ILQSRIDALR QENEELKKKN ASGQAS

Arabidopsis Description

ANAC050NAC domain containing protein 50 [Source:UniProtKB/TrEMBL;Acc:F4J3S6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.