Factsheet for VIT_16s0098g00760.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_11s0016g03470.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49530.1	VIT_11s0016g03470.t01	AT5G19570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	14.75	50.26
VIT_15s0048g02310.t01	Wine grape	cytosol	12.58	49.09
GSMUA_Achr2P11810_001	Banana	cytosol, mitochondrion, nucleus, plastid	19.41	43.1
VIT_17s0053g00740.t01	Wine grape	nucleus	14.75	39.92
KRH16970	Soybean	nucleus	34.78	37.97
KRH72602	Soybean	nucleus	34.63	37.86
Bra036520.1-P	Field mustard	nucleus	26.09	37.75
CDY19828	Canola	nucleus	26.09	37.75
AT5G24590.2	Thale cress	nucleus	26.24	37.47
CDX88115	Canola	cytosol	25.47	37.02
CDX80455	Canola	nucleus	25.62	36.18
KRH64275	Soybean	nucleus	33.85	36.15
CDY00208	Canola	nucleus	24.22	36.11
Bra019599.1-P	Field mustard	nucleus	24.22	36.11
Bra009774.1-P	Field mustard	nucleus	25.47	36.04
KRH53649	Soybean	nucleus	33.39	35.95
VIT_19s0085g00950.t01	Wine grape	nucleus	15.68	35.94
CDY08139	Canola	nucleus	25.78	35.78
AT3G49530.1	Thale cress	nucleus	25.93	35.61
Bra017980.1-P	Field mustard	nucleus	25.47	35.42
VIT_15s0048g02290.t01	Wine grape	nucleus	17.39	34.89
CDY05939	Canola	nucleus	25.0	34.77
PGSC0003DMT400001498	Potato	nucleus	34.32	34.64
VIT_02s0025g03020.t01	Wine grape	nucleus	33.85	34.49
PGSC0003DMT400069511	Potato	nucleus	33.39	34.13
Solyc03g080090.2.1	Tomato	nucleus	32.45	33.23
Solyc06g073050.2.1	Tomato	nucleus	30.28	32.77
VIT_15s0048g02320.t01	Wine grape	nucleus	16.93	30.88
GSMUA_Achr1P03560_001	Banana	nucleus	25.78	28.92
VIT_06s0080g00970.t01	Wine grape	nucleus	17.24	28.61
GSMUA_Achr4P29170_001	Banana	nucleus	25.31	28.35
VIT_02s0012g01040.t01	Wine grape	nucleus	15.99	28.22
Zm00001d049540_P002	Maize	cytosol	27.95	27.23
VIT_15s0048g02300.t01	Wine grape	nucleus	18.32	26.88
OQU79937	Sorghum	nucleus	27.17	26.36
VIT_15s0048g02270.t01	Wine grape	nucleus	24.69	25.32
Zm00001d024543_P001	Maize	nucleus	25.78	25.0
Os08t0157900-01	Rice	nucleus, plasma membrane	28.26	24.97
HORVU7Hr1G070780.5	Barley	nucleus	26.71	24.43
TraesCS7A01G299600.3	Wheat	nucleus	26.55	24.39
TraesCS7B01G187600.1	Wheat	nucleus	26.4	24.25
TraesCS7D01G295100.1	Wheat	nucleus	25.93	24.03
VIT_13s0019g05230.t01	Wine grape	nucleus	15.99	23.84
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane	27.02	22.92
VIT_13s0019g05240.t01	Wine grape	cytosol, nucleus, plastid	19.57	22.54
VIT_15s0048g02280.t01	Wine grape	golgi, nucleus, plasma membrane	17.55	22.11
CDX87118	Canola	nucleus	26.86	20.79
VIT_04s0044g01220.t01	Wine grape	nucleus	16.3	18.75
VIT_18s0001g01820.t01	Wine grape	nucleus	16.61	18.71
VIT_04s0079g00280.t01	Wine grape	cytosol, nucleus, plasma membrane	18.79	18.11

Protein Annotations

EntrezGene:100255616	wikigene:100255616	MapMan:15.5.17	Gene3D:3.30.310.150	EMBL:AM435365	ProteinID:CAN73792
ProteinID:CAN73792.1	ProteinID:CCB48104	ProteinID:CCB48104.1	UniProt:F6H790	EMBL:FN595247	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787
InterPro:IPR003441	InterPro:IPR036093	EntrezGene:LOC100255616	wikigene:LOC100255616	InterPro:NAC-dom	InterPro:NAC_dom_sf
PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR31989	PANTHER:PTHR31989:SF114	SUPFAM:SSF101941	TMHMM:TMhelix
UniParc:UPI000210A9A7	ArrayExpress:VIT_16s0098g00760	EnsemblPlantsGene:VIT_16s0098g00760	EnsemblPlants:VIT_16s0098g00760.t01	unigene:Vvi.3911	RefSeq:XP_002270158
RefSeq:XP_002270158.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr16:+:21111615..21114979

Molecular Weight (calculated)

71849.3 Da

IEP (calculated)

4.926

GRAVY (calculated)

-0.488

Length

644 amino acids

Sequence
(BLAST)

001: MGRAVKVKSV AIQGPKLART VTAIESLTRN QLPCCFLSAL EVESDVRHLC VATSLGPSHN PFYIPRMAVL SFNSLPLGFR FRPTDEELIT HYLRLKISGN
101: DEEVRVIREI DVCKWEPWDL PDLSEIRTND MEWFFFCPRD RKYPNGHRLN RATAAGYWKA TGRDRQIKSK TRLVGMKKTL VFHTGRAPHG KRTVWVMHEY
201: RATAKELDGT HPGQAAFVLC RLFKKQDEKA EGSNPDEIEP TVPSPTPANS PEETEFEVAL PQVAPVEKQE EEQPGFAEGC PGENPDEMTA ESSVPVGFCS
301: NPLNAYDEED SLAKLTAAEV DPSLQEDFGF FQDQMLEQLD YQLFSPVHSQ WHMGLESYVS YPVTGNFSNG HNGENEYGTN EPDPDVTEFL ESVLKENGSC
401: SESDTVSQTQ LDVEFDASAV IIDNIKTEAL QEMETNISAF KTTTGNSAVE YSGNMGFSHN NFGDDAFSVG STVNQLDNLF NRFEESSSYT NAVGSSDITG
501: PVIKRRTRQP QIQSDANNCG PQGTARRRIR LQTKLEVRHA CSMSRDLNCK EEAEVGQASQ SDTSGTTDEN QKIEVKKVDQ ELKMSMSLLR FRSKYKVPSV
601: FSKVPVPPAC HLIASSVSLL RVVGLVGLFV IFIGTWICRE YSVA

Best Arabidopsis Sequence Match ( AT3G49530.2 )
(BLAST)

001: MNQNLHVLSM DSLPVGLRFR PTDEELIRYY LRRKINGHDD DVKAIREIDI CKWEPWDLPD FSVIKTKDSE WLYFCPLDRK YPSGSRQNRA TVAGYWKATG
101: KDRKIKSGKT NIIGVKRTLV FHAGRAPRGT RTNWIIHEYR ATEDDLSGTN PGQSPFVICK LFKKEELVLG EEDSKSDEVE EPAVSSPTVE VTKSEVSEVI
201: KTEDVKRHDI AESSLVISGD SHSDACDEAT TAELVDFKWY PELESLDFTL FSPLHSQVQS ELGSSYNTFQ PGSSNFSGNN NNSFQIQTQY GTNEVDTYIS
301: DFLDSILKSP DEDPEKHKYV LQSGFDVVAP DQIAQVCQQG SAVDMSNDVS VTGIQIKSRQ AQPSGYTNDY IAQGNGPRRL RLQSNFNGIN TKNPELQAIK
401: REVRITPTF

Arabidopsis Description

NAC062NAC domain-containing protein 62 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCK6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.