Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc11g006870.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G49530.1 | Solyc11g006870.1.1 | AT5G19570.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400001498 | Potato | nucleus | 92.85 | 91.54 |
| Solyc06g073050.2.1 | Tomato | nucleus | 47.54 | 50.25 |
| GSMUA_Achr11P... | Banana | cytosol | 13.83 | 46.03 |
| Solyc03g078120.2.1 | Tomato | cytosol | 10.97 | 46.0 |
| Bra036520.1-P | Field mustard | nucleus | 26.71 | 37.75 |
| CDY19828 | Canola | nucleus | 26.71 | 37.75 |
| CDX88115 | Canola | cytosol | 26.23 | 37.25 |
| AT5G24590.2 | Thale cress | nucleus | 26.39 | 36.81 |
| Bra009774.1-P | Field mustard | nucleus | 26.39 | 36.48 |
| CDX80455 | Canola | nucleus | 26.23 | 36.18 |
| Solyc03g098190.2.1 | Tomato | nucleus | 14.15 | 35.74 |
| GSMUA_Achr2P11810_001 | Banana | cytosol, mitochondrion, nucleus, plastid | 15.9 | 34.48 |
| KRH72602 | Soybean | nucleus | 32.27 | 34.47 |
| KRH16970 | Soybean | nucleus | 31.96 | 34.07 |
| KRH53649 | Soybean | nucleus | 32.11 | 33.78 |
| Bra019599.1-P | Field mustard | nucleus | 22.89 | 33.33 |
| CDY00208 | Canola | nucleus | 22.89 | 33.33 |
| AT3G49530.1 | Thale cress | nucleus | 24.48 | 32.84 |
| KRH64275 | Soybean | nucleus | 31.48 | 32.84 |
| CDY05939 | Canola | nucleus | 24.01 | 32.61 |
| CDY08139 | Canola | nucleus | 24.01 | 32.54 |
| VIT_16s0098g00760.t01 | Wine grape | mitochondrion | 33.23 | 32.45 |
| Bra017980.1-P | Field mustard | nucleus | 23.85 | 32.4 |
| Solyc08g077110.2.1 | Tomato | nucleus | 14.15 | 26.18 |
| Solyc05g055480.2.1 | Tomato | nucleus | 15.74 | 25.65 |
| Solyc06g061080.2.1 | Tomato | nucleus | 13.67 | 25.52 |
| Solyc06g074170.2.1 | Tomato | nucleus | 15.74 | 24.21 |
| GSMUA_Achr4P29170_001 | Banana | nucleus | 21.94 | 24.0 |
| GSMUA_Achr1P03560_001 | Banana | nucleus | 21.3 | 23.34 |
| Solyc11g068750.1.1 | Tomato | nucleus, plasma membrane | 16.38 | 22.79 |
| Zm00001d049540_P002 | Maize | cytosol | 23.69 | 22.54 |
| OQU79937 | Sorghum | nucleus | 23.53 | 22.29 |
| Solyc11g008010.1.1 | Tomato | endoplasmic reticulum, plasma membrane | 16.22 | 21.94 |
| Zm00001d024543_P001 | Maize | nucleus | 23.05 | 21.84 |
| Solyc02g036430.1.1 | Tomato | nucleus | 19.24 | 21.42 |
| GSMUA_AchrUn_... | Banana | extracellular, plasma membrane | 25.12 | 20.82 |
| TraesCS7B01G187600.1 | Wheat | nucleus | 22.89 | 20.54 |
| TraesCS7A01G299600.3 | Wheat | nucleus | 22.73 | 20.4 |
| CDX87118 | Canola | nucleus | 26.87 | 20.31 |
| TraesCS7D01G295100.1 | Wheat | nucleus | 22.42 | 20.29 |
| Os08t0157900-01 | Rice | nucleus, plasma membrane | 23.37 | 20.16 |
| HORVU7Hr1G070780.5 | Barley | nucleus | 22.42 | 20.03 |
| Solyc11g008000.1.1 | Tomato | nucleus | 15.9 | 18.94 |
| Solyc05g055470.2.1 | Tomato | nucleus | 16.38 | 18.93 |
| Solyc12g056790.1.1 | Tomato | nucleus | 16.06 | 17.12 |
| Solyc04g072220.2.1 | Tomato | cytosol, nucleus, plastid | 15.58 | 16.36 |
| Solyc11g005920.1.1 | Tomato | nucleus | 15.26 | 13.97 |
| Solyc02g081270.2.1 | Tomato | nucleus | 17.81 | 10.88 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:IPR003441 | InterPro:IPR036093 | UniProt:K4BHY5 | InterPro:NAC-dom | InterPro:NAC_dom_sf |
| PFAM:PF02365 | PFscan:PS51005 | PANTHER:PTHR31989 | PANTHER:PTHR31989:SF14 | SUPFAM:SSF101941 | EnsemblPlantsGene:Solyc03g080090.2 |
| EnsemblPlants:Solyc03g080090.2.1 | TMHMM:TMhelix | UniParc:UPI000276835E | SEG:seg | : | : |
Description
No Description!
Coordinates
chr3:+:51994844..51999842
Molecular Weight (calculated)
69850.2 Da
IEP (calculated)
4.635
GRAVY (calculated)
-0.591
Length
629 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVLPGENPI AVLPVDKQMG IPPLNTLPVG YRFRPTDEEL VNHYLRLKIN GADSQVSVIR EVDICKLEPW DLPDLSVVES HDNEWFFFCP KDRKYQNGQR
101: LNRATERGYW KATGKDRNIV TKKGSKIGMK KTLVYYIGRA PEGKRTHWVI HEYRATEKSL DGSHPGQNDL KQDEHVDNSN LDAEQNASVD KSPAEDELSE
201: AATPLTVIPP LNDCDKSYAA KFSKGEMYGK QLPIESHSNS CIADDTEDQM LDITSIPDLE KELGNFYDPS SQPDWKIFSP LHSQMQAELG SSYLQAPLNN
301: DMFGYQKDVQ FPYGTNALDI NDFLNSVLVN SDEFSCEDSG QELASHHIDT KNCSITGPMI KDSGSCSESE AEVTQGLVEP DFFDPEVLWD NFDREAAVKR
401: EVNSLEATAL KARSPLGLSY VGNDYAVGNL GFFQNTYPGH YGYPASIGGS QVPNFLKVEQ SGVRNNVAST ESGSGTGIKL RTRQMHNQLD DTQFNQPDNT
501: QSRQQGTAHR RIRLHMKMQV GPVECRMRSD SSEGAEIHEA VAEGEKASDE HSSTTSDTTT IKDLVGETDE LSTQVKDADD SPVEESLDVS FKSATKLSSS
601: SHVYMSKVLV VASLLVVFIG VWSCFRLCV
101: LNRATERGYW KATGKDRNIV TKKGSKIGMK KTLVYYIGRA PEGKRTHWVI HEYRATEKSL DGSHPGQNDL KQDEHVDNSN LDAEQNASVD KSPAEDELSE
201: AATPLTVIPP LNDCDKSYAA KFSKGEMYGK QLPIESHSNS CIADDTEDQM LDITSIPDLE KELGNFYDPS SQPDWKIFSP LHSQMQAELG SSYLQAPLNN
301: DMFGYQKDVQ FPYGTNALDI NDFLNSVLVN SDEFSCEDSG QELASHHIDT KNCSITGPMI KDSGSCSESE AEVTQGLVEP DFFDPEVLWD NFDREAAVKR
401: EVNSLEATAL KARSPLGLSY VGNDYAVGNL GFFQNTYPGH YGYPASIGGS QVPNFLKVEQ SGVRNNVAST ESGSGTGIKL RTRQMHNQLD DTQFNQPDNT
501: QSRQQGTAHR RIRLHMKMQV GPVECRMRSD SSEGAEIHEA VAEGEKASDE HSSTTSDTTT IKDLVGETDE LSTQVKDADD SPVEESLDVS FKSATKLSSS
601: SHVYMSKVLV VASLLVVFIG VWSCFRLCV
001: MKEDMEVLSL ASLPVGFRFS PTDEELVRYY LRLKINGHDN DVRVIREIDI CKWEPWDLPD FSVVKTTDSE WLFFCPLDRK YPSGSRMNRA TVAGYWKATG
101: KDRKIKSGKT KIIGVKRTLV FYTGRAPKGT RTCWIMHEYR ATEKDLDGTK SGQNPFVVCK LFKKQDIVNG AAEPEESKSC EVEPAVSSPT VVDEVEMSEV
201: SPVFPKTEET NPCDVAESSL VIPSECRSGY SVPEVTTTGL DDIDWLSFME FDSPKLFSPL HSQVQSELGS SFNGLQSESS ELFKNHNEDY IQTQYGTNDA
301: DEYMSKFLDS FLDIPYEPEQ IPYEPQNLSS CNKINDESKR GIKIRARRAQ APGCAEQFVM QGDASRRLRL QVNLNSHKSE TDSTQLQFIK KEVKDTTTET
401: MTKGCGNFTR SKSRTSFIFK KIAAMGCSYR GLFRVGVVAV VCVMSVCSLV A
101: KDRKIKSGKT KIIGVKRTLV FYTGRAPKGT RTCWIMHEYR ATEKDLDGTK SGQNPFVVCK LFKKQDIVNG AAEPEESKSC EVEPAVSSPT VVDEVEMSEV
201: SPVFPKTEET NPCDVAESSL VIPSECRSGY SVPEVTTTGL DDIDWLSFME FDSPKLFSPL HSQVQSELGS SFNGLQSESS ELFKNHNEDY IQTQYGTNDA
301: DEYMSKFLDS FLDIPYEPEQ IPYEPQNLSS CNKINDESKR GIKIRARRAQ APGCAEQFVM QGDASRRLRL QVNLNSHKSE TDSTQLQFIK KEVKDTTTET
401: MTKGCGNFTR SKSRTSFIFK KIAAMGCSYR GLFRVGVVAV VCVMSVCSLV A
Arabidopsis Description
NAC091NAC domain-containing protein 91 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKG8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.