Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
extracellular: 29876421 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400018364 | Potato | mitochondrion, nucleus | 10.3 | 91.38 |
| Solyc03g098190.2.1 | Tomato | nucleus | 13.61 | 56.22 |
| Solyc02g036430.1.1 | Tomato | nucleus | 29.45 | 53.63 |
| Solyc03g078120.2.1 | Tomato | cytosol | 7.58 | 52.0 |
| GSMUA_Achr1P02820_001 | Banana | nucleus | 18.46 | 51.08 |
| GSMUA_Achr11P... | Banana | nucleus | 18.27 | 49.09 |
| GSMUA_AchrUn_... | Banana | nucleus | 16.52 | 47.89 |
| VIT_04s0079g00280.t01 | Wine grape | cytosol, nucleus, plasma membrane | 30.61 | 47.16 |
| KRH17271 | Soybean | cytosol, nucleus, plasma membrane | 28.67 | 45.81 |
| KRH72917 | Soybean | cytosol, nucleus, plasma membrane | 27.99 | 44.79 |
| KRH30885 | Soybean | cytosol, nucleus, vacuole | 28.18 | 43.15 |
| KRG98003 | Soybean | cytosol, nucleus, plasma membrane | 28.38 | 43.07 |
| CDY28745 | Canola | cytosol | 19.05 | 41.0 |
| Bra021366.1-P | Field mustard | nucleus | 18.95 | 40.62 |
| CDY43143 | Canola | nucleus | 18.76 | 40.38 |
| CDY49932 | Canola | nucleus | 18.76 | 40.29 |
| Bra032009.1-P | Field mustard | nucleus | 18.66 | 40.17 |
| AT3G03200.1 | Thale cress | nucleus | 18.66 | 40.08 |
| Solyc08g077110.2.1 | Tomato | nucleus | 13.02 | 39.41 |
| AT5G17260.1 | Thale cress | nucleus | 18.17 | 39.29 |
| CDY16943 | Canola | nucleus | 18.66 | 38.63 |
| Os03t0119966-01 | Rice | nucleus | 24.39 | 38.62 |
| Bra039745.1-P | Field mustard | nucleus | 20.31 | 38.28 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 20.51 | 37.95 |
| CDX70745 | Canola | cytosol | 18.17 | 37.85 |
| CDX78734 | Canola | cytosol | 17.98 | 37.76 |
| Bra006392.1-P | Field mustard | cytosol | 17.98 | 37.76 |
| Solyc06g061080.2.1 | Tomato | nucleus | 12.34 | 37.69 |
| AT1G65910.1 | Thale cress | nucleus | 22.84 | 37.24 |
| EER95621 | Sorghum | nucleus | 24.2 | 36.51 |
| TraesCS4D01G345300.1 | Wheat | cytosol, nucleus, peroxisome | 24.59 | 36.25 |
| GSMUA_Achr8P13430_001 | Banana | nucleus | 21.38 | 36.24 |
| Zm00001d027395_P009 | Maize | nucleus | 23.32 | 36.14 |
| CDY60870 | Canola | nucleus | 20.21 | 36.05 |
| TraesCS4B01G350600.1 | Wheat | cytosol, nucleus, peroxisome | 24.2 | 36.03 |
| TraesCS5A01G519300.1 | Wheat | cytosol, nucleus, peroxisome | 24.3 | 36.02 |
| HORVU4Hr1G085320.1 | Barley | cytosol, nucleus, peroxisome | 23.91 | 35.7 |
| Zm00001d048493_P004 | Maize | nucleus | 23.81 | 35.66 |
| Bra008567.1-P | Field mustard | nucleus | 15.35 | 35.35 |
| CDY16427 | Canola | nucleus | 20.31 | 35.13 |
| CDY21216 | Canola | nucleus | 14.67 | 35.12 |
| Solyc05g055480.2.1 | Tomato | nucleus | 10.79 | 28.76 |
| Solyc06g074170.2.1 | Tomato | nucleus | 9.91 | 24.94 |
| Solyc11g008010.1.1 | Tomato | endoplasmic reticulum, plasma membrane | 10.69 | 23.66 |
| Solyc11g008000.1.1 | Tomato | nucleus | 11.66 | 22.73 |
| Solyc05g055470.2.1 | Tomato | nucleus | 11.95 | 22.61 |
| Solyc11g068750.1.1 | Tomato | nucleus, plasma membrane | 9.91 | 22.57 |
| Solyc12g056790.1.1 | Tomato | nucleus | 12.93 | 22.54 |
| Solyc04g072220.2.1 | Tomato | cytosol, nucleus, plastid | 12.83 | 22.04 |
| Solyc03g080090.2.1 | Tomato | nucleus | 10.88 | 17.81 |
| Solyc06g073050.2.1 | Tomato | nucleus | 10.11 | 17.48 |
| Solyc11g005920.1.1 | Tomato | nucleus | 10.69 | 16.01 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003441 |
| InterPro:IPR036093 | UniProt:K4B9Z7 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 | PFscan:PS51005 |
| PANTHER:PTHR31989 | PANTHER:PTHR31989:SF6 | SUPFAM:SSF101941 | SUPFAM:SSF53807 | EnsemblPlantsGene:Solyc02g081270.2 | EnsemblPlants:Solyc02g081270.2.1 |
| UniParc:UPI000276777C | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr2:+:45300120..45309553
Molecular Weight (calculated)
116996.0 Da
IEP (calculated)
5.467
GRAVY (calculated)
-0.448
Length
1029 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAPVSLPPGF RFHPTDEELV AYYLKRKINA KKIELDIIPE VDLYKCEPWD LPGKSLLPSK DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS
0101: QTRSVGMKKT LVYYRGRAPH GARTDWVMHE YRLDERECEV ANGLQDAYAL CRVIKKNLNT TNGAKIGEQQ YYGNAATSDR SSSVDHVYSH DGGRSCHDMM
0201: ESSHGLMPSS SSSTSMAVHG SSPINDNVCA PSEADDDKWM QYLSSNEPNF TFNNSLQPIP NCGTLPFPPS KVDIALECAR LQHRFTLPQL EIQDFPQVGS
0301: YADHAKIPAQ SSFIQQASQN HVINQDYSWG GNYNSSCAPN MDDDFSFLIP LNNSNQIHHH GDLGSFNFME QDENVIRSID IGDFDHHDFK SDRMVENLRW
0401: IGMSNRDLEK TFLEDYKTVP LENVATVHIE EHELQGENSG HSNSFITGFN ETEANNFSIG FDNFLDNDGD IDGFSNSPSF EVYEKVEVNH GFFIATRQAS
0501: KTFYHQVTPS RTLKIHKNLV PLHDFPKSSI NNFVTRPWTT TMRTLVGMVA ILQTFWIYFG ECLELEVKGF KLEDKKGVYE ECCLIEGVEK KIKKVHDFKW
0601: DFYEQNKFLI GEKQEEGIKY CCYVEKKWPN YLTLSLDYAN AAIPTVKVGN ISKVGDSAYF RIYYGQTFKV IKNTLDGKSY LLIQNNTRMA SRTKYCTSRI
0701: KSFVIPLANY SIETDYFFPV SFFEVRMHSF SIILILLGLL GNLKGITSTY VASQCVLKLY QDGQVESINK TDHQQLAQYA AHFIANTDEA QPCNFATFVP
0801: IGEDAPLQRA EWIKYLGVFA NMENRANQVY DAIKENYLCL SKAATGRSSL KPTVSWMEYK DGVWSFTRDP YKLKFVEDAG GVNVDDSINK VTYNMSNPDD
0901: LEEIHAILCT VDVVIDETYT SDPAAYNGST FLGNINLEDQ TCFAFLTNQS IWRYDKRVQN SVVLDWYDGA VSQPQLVLAD IVEALYPTGN YNTTYFRNIA
1001: KGEGIISIVP EMCERDSSIP MEPTVVACQ
0101: QTRSVGMKKT LVYYRGRAPH GARTDWVMHE YRLDERECEV ANGLQDAYAL CRVIKKNLNT TNGAKIGEQQ YYGNAATSDR SSSVDHVYSH DGGRSCHDMM
0201: ESSHGLMPSS SSSTSMAVHG SSPINDNVCA PSEADDDKWM QYLSSNEPNF TFNNSLQPIP NCGTLPFPPS KVDIALECAR LQHRFTLPQL EIQDFPQVGS
0301: YADHAKIPAQ SSFIQQASQN HVINQDYSWG GNYNSSCAPN MDDDFSFLIP LNNSNQIHHH GDLGSFNFME QDENVIRSID IGDFDHHDFK SDRMVENLRW
0401: IGMSNRDLEK TFLEDYKTVP LENVATVHIE EHELQGENSG HSNSFITGFN ETEANNFSIG FDNFLDNDGD IDGFSNSPSF EVYEKVEVNH GFFIATRQAS
0501: KTFYHQVTPS RTLKIHKNLV PLHDFPKSSI NNFVTRPWTT TMRTLVGMVA ILQTFWIYFG ECLELEVKGF KLEDKKGVYE ECCLIEGVEK KIKKVHDFKW
0601: DFYEQNKFLI GEKQEEGIKY CCYVEKKWPN YLTLSLDYAN AAIPTVKVGN ISKVGDSAYF RIYYGQTFKV IKNTLDGKSY LLIQNNTRMA SRTKYCTSRI
0701: KSFVIPLANY SIETDYFFPV SFFEVRMHSF SIILILLGLL GNLKGITSTY VASQCVLKLY QDGQVESINK TDHQQLAQYA AHFIANTDEA QPCNFATFVP
0801: IGEDAPLQRA EWIKYLGVFA NMENRANQVY DAIKENYLCL SKAATGRSSL KPTVSWMEYK DGVWSFTRDP YKLKFVEDAG GVNVDDSINK VTYNMSNPDD
0901: LEEIHAILCT VDVVIDETYT SDPAAYNGST FLGNINLEDQ TCFAFLTNQS IWRYDKRVQN SVVLDWYDGA VSQPQLVLAD IVEALYPTGN YNTTYFRNIA
1001: KGEGIISIVP EMCERDSSIP MEPTVVACQ
001: MSPLPYSSWP LILLLVLWCM VARLSNGASN NVKVGIISKV EDATNFHIYY GQTFKVIKNA IDGKSYLLIQ NTSRMAVRTK YCTSRIKSYV IPLLNYSLDT
101: QSSQGSVPVS FFELLGLLGS LKGITSDEVV SPCLLKLCEA GEVVKLDKGE QLSQFAAHFI SDTDQPQTCN FANFFPLSEG TPLQRAEWIK FLGAFTNLET
201: KANQVYDSVK ASYTCLSQMA ANKTKSFKPI VAWMGYDQNG GMWSFTKESH KLKFVEDAGG ENIDKSINKV SYNVSDPDDL EALHAILCTV DAVIDETLSS
301: DPQNYTQTTF LANINVDDNS CFAFLANQSI WRYDKRVRNR TTLDWYDGAI SQPNLVLADI VEALFPTGNY TTSYFRNIAK GEGVINISPD MCDRDASLPL
401: VPSIPACG
101: QSSQGSVPVS FFELLGLLGS LKGITSDEVV SPCLLKLCEA GEVVKLDKGE QLSQFAAHFI SDTDQPQTCN FANFFPLSEG TPLQRAEWIK FLGAFTNLET
201: KANQVYDSVK ASYTCLSQMA ANKTKSFKPI VAWMGYDQNG GMWSFTKESH KLKFVEDAGG ENIDKSINKV SYNVSDPDDL EALHAILCTV DAVIDETLSS
301: DPQNYTQTTF LANINVDDNS CFAFLANQSI WRYDKRVRNR TTLDWYDGAI SQPNLVLADI VEALFPTGNY TTSYFRNIAK GEGVINISPD MCDRDASLPL
401: VPSIPACG
Arabidopsis Description
At1g65900/F12P19_7 [Source:UniProtKB/TrEMBL;Acc:Q94A98]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.