Factsheet for TraesCS4B01G350600.1

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 1
mitochondrion 1
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, peroxisome
Any Predictor:	cytosol, nucleus, peroxisome
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G519300.1	Wheat	cytosol, nucleus, peroxisome	97.54	97.12
TraesCS4D01G345300.1	Wheat	cytosol, nucleus, peroxisome	97.68	96.7
HORVU4Hr1G085320.1	Barley	cytosol, nucleus, peroxisome	93.63	93.9
PGSC0003DMT400018364	Potato	mitochondrion, nucleus	13.46	80.17
Os03t0119966-01	Rice	nucleus	74.53	79.23
EER95621	Sorghum	nucleus	74.82	75.81
Zm00001d048493_P004	Maize	nucleus	72.79	73.22
Zm00001d027395_P009	Maize	nucleus	67.29	70.03
TraesCS5B01G356100.1	Wheat	nucleus	19.1	60.83
GSMUA_Achr11P...	Banana	nucleus	33.43	60.31
GSMUA_Achr1P02820_001	Banana	nucleus	30.68	56.99
GSMUA_AchrUn_...	Banana	nucleus	27.93	54.37
TraesCS5B01G356000.1	Wheat	nucleus	20.26	54.05
GSMUA_Achr8P13430_001	Banana	nucleus	44.86	51.07
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	40.23	50.0
PGSC0003DMT400055322	Potato	nucleus	36.61	45.02
VIT_04s0079g00280.t01	Wine grape	cytosol, nucleus, plasma membrane	43.13	44.61
KRH17271	Soybean	cytosol, nucleus, plasma membrane	41.1	44.1
Solyc02g036430.1.1	Tomato	nucleus	35.89	43.89
KRH72917	Soybean	cytosol, nucleus, plasma membrane	40.38	43.39
KRH30885	Soybean	cytosol, nucleus, vacuole	40.67	41.82
KRG98003	Soybean	cytosol, nucleus, plasma membrane	40.67	41.45
Bra039745.1-P	Field mustard	nucleus	32.42	41.03
AT5G17260.1	Thale cress	nucleus	27.5	39.92
CDY60870	Canola	nucleus	32.56	38.99
AT1G65910.1	Thale cress	nucleus	35.6	38.99
CDY16943	Canola	nucleus	27.93	38.83
Bra006392.1-P	Field mustard	cytosol	27.35	38.57
CDX78734	Canola	cytosol	27.35	38.57
Bra021366.1-P	Field mustard	nucleus	26.63	38.33
CDX70745	Canola	cytosol	27.35	38.26
CDY49932	Canola	nucleus	26.34	38.0
AT3G03200.1	Thale cress	nucleus	26.19	37.79
CDY43143	Canola	nucleus	26.05	37.66
CDY16427	Canola	nucleus	32.42	37.65
Bra032009.1-P	Field mustard	nucleus	25.9	37.45
CDY28745	Canola	cytosol	25.9	37.45
TraesCS1B01G192200.1	Wheat	cytosol, nucleus, plastid	18.38	34.79
Bra008567.1-P	Field mustard	nucleus	22.43	34.68
CDY21216	Canola	nucleus	19.83	31.86
TraesCS6B01G033000.1	Wheat	nucleus	15.2	28.77
TraesCS1B01G277300.1	Wheat	nucleus	17.51	28.01
TraesCS2B01G616900.1	Wheat	nucleus	15.77	26.85
TraesCS3B01G208300.2	Wheat	cytosol	17.37	24.95
Solyc02g081270.2.1	Tomato	nucleus	36.03	24.2
TraesCS7B01G196900.1	Wheat	nucleus	19.39	20.84
TraesCS7B01G187600.1	Wheat	nucleus	19.25	18.97
TraesCS6B01G451300.1	Wheat	nucleus	14.76	15.91
TraesCS5B01G271800.1	Wheat	cytosol, golgi, peroxisome	6.08	7.16

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003441	InterPro:IPR036093	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005
PANTHER:PTHR31989	PANTHER:PTHR31989:SF6	SUPFAM:SSF101941	EnsemblPlantsGene:TraesCS4B01G350600	EnsemblPlants:TraesCS4B01G350600.1	SEG:seg

Description

No Description!

Coordinates

chr4B:-:643308975..643312903

Molecular Weight (calculated)

76063.5 Da

IEP (calculated)

6.157

GRAVY (calculated)

-0.557

Length

691 amino acids

Sequence
(BLAST)

001: MAPVSLPPGF RFHPTDEELI IYYLKSKING RQIELEIIPE VDLYKCEPWD LPEKSFLPSK DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS
101: QKRAVGMKKT LVYYRGRAPH GSRTDWVMHE YRLDERECEI DNGLQDAYAL CRIFKKTAPG PKIMEHYGAA QYHGEPPQWT PSSVERSPTP CDGRGGGDDF
201: ESSSFSFPTE APMTSGSMHG GGFGMQMIGG MPQEDGRWMQ FLSEDAFNAT NPYFMNPAAA SNFSCLPSKV DVALECARLQ HRLTLPPLEV EDFPHDVSLD
301: TKTGILQSNP NEVDILQEFL SVASASQELI NGSGSSSYPD MWLGAGTSSG GGHYMNELSS LVDLGAAKAK EEVDNFYHMC GIGASMTRRD DEPGRLVEIS
401: DMQEFKEEKK RPVENLRGVK LVNNDLGEIV VEGDESNPAE GITHYPIQDT AENSGEAGHH MTDHTTDEGG IDTAPIFSQS QPDDFALAIG FGNDGDDNTD
501: PNASFDLYGK VDVQRGLFVS RVGAAKTFFH RIEPPKKVSF HLNPAASEVS KAIEKFHYLP VTSKVSGSGS SSSRVSVFGK VKALIRGKFP TMRRPPSPQR
601: QRPEATVSEL LQIVSLLLAP KEAVAEREEE MARKKAKPGR RGCDGGCSSS WQLGLPGKGS KGISSMFLSG KWAFLTSALA AVRAPGPCNH F

Best Arabidopsis Sequence Match ( AT1G65910.1 )
(BLAST)

001: MAPVSMPPGF RFHPTDEELV IYYLKRKING RTIELEIIPE IDLYKCEPWD LPGKSLLPSK DLEWFFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVTS
101: HSRMVGTKKT LVYYRGRAPH GSRTDWVMHE YRLEEQECDS KSGIQDAYAL CRVFKKSALA NKIEEQHHGT KKNKGTTNSE QSTSSTCLYS DGMYENLENS
201: GYPVSPETGG LTQLGNNSSS DMETIENKWS QFMSHDTSFN FPPQSQYGTI SYPPSKVDIA LECARLQNRM LPPVPPLYVE GLTHNEYFGN NVANDTDEML
301: SKIIALAQAS HEPRNSLDSW DGGSASGNFH GDFNYSGEKV SCLEANVEAV DMQEHHVNFK EERLVENLRW VGVSSKELEK SFVEEHSTVI PIEDIWRYHN
401: DNQEQEHHDQ DGMDVNNNNG DVDDAFTLEF SENEHNENLL DKNDHETTSS SCFEVVKKVE VSHGLFVTTR QVTNTFFQQI VPSQTVIVYI NPTDGNECCH
501: SMTSKEEVHV RKKINPRING VSSTVLGQWR KFAHVIGFIP MLLLMRCVHR GNSNKNRGSE GYSRQPTRGD CNNRGTILMM ENAVVRRKIW KKKKEKNMVD
601: EQGFRFQDSF VLKKLGLSLA IILAVSTISL I

Arabidopsis Description

anac028NAC028 [Source:UniProtKB/TrEMBL;Acc:A0A178W7T7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.