Factsheet for PGSC0003DMT400055322

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g036430.1.1	Tomato	nucleus	96.98	96.46
PGSC0003DMT400018364	Potato	mitochondrion, nucleus	16.19	78.45
GSMUA_Achr1P02820_001	Banana	nucleus	36.3	54.84
PGSC0003DMT400079749	Potato	nucleus	24.38	54.8
GSMUA_Achr11P...	Banana	nucleus	36.12	53.0
GSMUA_AchrUn_...	Banana	nucleus	32.03	50.7
VIT_04s0079g00280.t01	Wine grape	cytosol, nucleus, plasma membrane	57.65	48.5
KRH17271	Soybean	cytosol, nucleus, plasma membrane	53.56	46.74
KRH72917	Soybean	cytosol, nucleus, plasma membrane	52.49	45.88
KRH30885	Soybean	cytosol, nucleus, vacuole	54.63	45.68
KRG98003	Soybean	cytosol, nucleus, plasma membrane	54.63	45.28
Bra021366.1-P	Field mustard	nucleus	35.94	42.08
CDY43143	Canola	nucleus	35.77	42.05
Bra039745.1-P	Field mustard	nucleus	40.75	41.94
AT5G17260.1	Thale cress	nucleus	35.41	41.81
CDY49932	Canola	nucleus	35.59	41.75
Bra032009.1-P	Field mustard	nucleus	35.41	41.63
CDY28745	Canola	cytosol	35.41	41.63
AT3G03200.1	Thale cress	nucleus	35.23	41.34
CDY16943	Canola	nucleus	36.3	41.05
CDX70745	Canola	cytosol	35.41	40.28
PGSC0003DMT400045129	Potato	nucleus	23.84	40.24
CDY60870	Canola	nucleus	41.1	40.03
CDX78734	Canola	cytosol	34.88	40.0
Bra006392.1-P	Field mustard	cytosol	34.88	40.0
GSMUA_Achr8P13430_001	Banana	nucleus	42.7	39.54
AT1G65910.1	Thale cress	nucleus	43.59	38.83
CDY16427	Canola	nucleus	41.1	38.82
Os03t0119966-01	Rice	nucleus	44.66	38.62
Bra008567.1-P	Field mustard	nucleus	29.89	37.58
EER95621	Sorghum	nucleus	45.37	37.39
Zm00001d027395_P009	Maize	nucleus	43.95	37.2
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	36.65	37.05
TraesCS4B01G350600.1	Wheat	cytosol, nucleus, peroxisome	45.02	36.61
Zm00001d048493_P004	Maize	nucleus	44.66	36.54
TraesCS4D01G345300.1	Wheat	cytosol, nucleus, peroxisome	45.37	36.53
HORVU4Hr1G085320.1	Barley	cytosol, nucleus, peroxisome	44.66	36.43
TraesCS5A01G519300.1	Wheat	cytosol, nucleus, peroxisome	44.84	36.31
CDY21216	Canola	nucleus	27.4	35.81
PGSC0003DMT400079791	Potato	nucleus	21.17	29.75
PGSC0003DMT400060087	Potato	nucleus	20.11	28.9
PGSC0003DMT400015077	Potato	nucleus	18.51	25.49
PGSC0003DMT400050482	Potato	nucleus	18.86	24.65
PGSC0003DMT400079789	Potato	cytosol, nucleus, plastid	22.6	23.39
PGSC0003DMT400060090	Potato	nucleus	22.06	23.18
PGSC0003DMT400043681	Potato	nucleus	22.24	21.33
PGSC0003DMT400073779	Potato	nucleus	19.22	19.93
PGSC0003DMT400001498	Potato	nucleus	22.6	19.91
PGSC0003DMT400069511	Potato	nucleus	20.46	18.25
PGSC0003DMT400079995	Potato	nucleus	22.42	13.98

Protein Annotations

EntrezGene:102583210	MapMan:15.5.17	Gene3D:3.30.310.150	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR003441	InterPro:IPR036093	UniProt:M1BXQ9	InterPro:NAC-dom	InterPro:NAC_dom_sf
PFAM:PF02365	EnsemblPlantsGene:PGSC0003DMG400021474	PGSC:PGSC0003DMG400021474	EnsemblPlants:PGSC0003DMT400055322	PFscan:PS51005	PANTHER:PTHR31989
PANTHER:PTHR31989:SF6	SUPFAM:SSF101941	UniParc:UPI000295EE07	RefSeq:XP_015165583.1	SEG:seg	:

Description

NAC domain protein [Source:PGSC_GENE;Acc:PGSC0003DMG400021474]

Coordinates

chr2:+:17870801..17874537

Molecular Weight (calculated)

64349.1 Da

IEP (calculated)

4.881

GRAVY (calculated)

-0.705

Length

562 amino acids

Sequence
(BLAST)

001: MAPVSLPPGF RFHPTDEELV AYYLKRKING RKIELEVIPE VDLYKCEPWD LPDKSLLPSK DMEWYFFSPR DRKYPNGTRT NRATKAGYWK ATGKDRKVNS
101: QMRPIGMKKT LVYYRGRAPH GTRTGWVMHE YRLEERECEV ANGLQDAYAL CRVFKKSLNV PKIGDHYGSD RSGCSINDQL YTEGRGEDSD YGMMPTTTSS
201: SSMLLHGSPL MNVAPAPSND DNKWMQYLSD EANFTFNNNP SFPTNGPFPY NHPSKVDIAL ECARLQHRFA LPPLEVQDFP QVGYVMSQSN DVMYHQSTTN
301: QTDIVQEILS VAQASHDLTN QEYSWDGNYN NINYGDDFSF LPHNNNHDLG NSFNFMDQLK EDDDQNNSIP IVDFDEDFKS ETMVERLRWV GMSQKDDKTF
401: LEDYKTVPIE NISGPHKEEQ DQLQGEASGQ QNNMNETEAN NFSLGFGNDD NFLDDEETDG FSSSPSFEVY EKIEVNQGMF IATRQVANTF YHQVAPSKTV
501: TIHRDMVTMH EFPIRKITKN ATFLDTFMAF SRKTLSGVVM RVNTLVELIA PLHAFWTILG NA

Best Arabidopsis Sequence Match ( AT1G65910.1 )
(BLAST)

001: MAPVSMPPGF RFHPTDEELV IYYLKRKING RTIELEIIPE IDLYKCEPWD LPGKSLLPSK DLEWFFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVTS
101: HSRMVGTKKT LVYYRGRAPH GSRTDWVMHE YRLEEQECDS KSGIQDAYAL CRVFKKSALA NKIEEQHHGT KKNKGTTNSE QSTSSTCLYS DGMYENLENS
201: GYPVSPETGG LTQLGNNSSS DMETIENKWS QFMSHDTSFN FPPQSQYGTI SYPPSKVDIA LECARLQNRM LPPVPPLYVE GLTHNEYFGN NVANDTDEML
301: SKIIALAQAS HEPRNSLDSW DGGSASGNFH GDFNYSGEKV SCLEANVEAV DMQEHHVNFK EERLVENLRW VGVSSKELEK SFVEEHSTVI PIEDIWRYHN
401: DNQEQEHHDQ DGMDVNNNNG DVDDAFTLEF SENEHNENLL DKNDHETTSS SCFEVVKKVE VSHGLFVTTR QVTNTFFQQI VPSQTVIVYI NPTDGNECCH
501: SMTSKEEVHV RKKINPRING VSSTVLGQWR KFAHVIGFIP MLLLMRCVHR GNSNKNRGSE GYSRQPTRGD CNNRGTILMM ENAVVRRKIW KKKKEKNMVD
601: EQGFRFQDSF VLKKLGLSLA IILAVSTISL I

Arabidopsis Description

anac028NAC028 [Source:UniProtKB/TrEMBL;Acc:A0A178W7T7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.