Factsheet for PGSC0003DMT400079789

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g008000.1.1	Tomato	nucleus	92.82	95.45
CDY70627	Canola	cytosol	20.99	69.09
KRH34662	Soybean	cytosol	11.05	65.93
PGSC0003DMT400060090	Potato	nucleus	63.35	64.3
PGSC0003DMT400018364	Potato	mitochondrion, nucleus	11.6	54.31
VIT_13s0019g05240.t01	Wine grape	cytosol, nucleus, plastid	49.36	47.94
Bra028790.1-P	Field mustard	cytosol, nucleus, plastid	39.78	42.86
AT3G10500.1	Thale cress	cytosol, nucleus, vacuole	43.28	42.81
CDY58437	Canola	cytosol, nucleus, plastid	43.65	42.63
Bra009456.1-P	Field mustard	cytosol, nucleus, plastid	43.28	42.42
CDX70227	Canola	cytosol, nucleus, vacuole	43.28	42.42
PGSC0003DMT400079749	Potato	nucleus	19.52	42.4
CDY44853	Canola	cytosol, nucleus, vacuole	43.46	42.14
CDY14157	Canola	cytosol, nucleus, vacuole	39.96	42.05
CDY11289	Canola	cytosol, nucleus, vacuole	43.28	41.52
AT5G04410.1	Thale cress	cytosol, nucleus, plastid	43.28	41.45
CDY61762	Canola	cytosol, nucleus, plastid	39.41	41.23
Bra005804.1-P	Field mustard	cytosol, nucleus, vacuole	42.91	41.09
CDY41354	Canola	cytosol, nucleus, plastid	40.52	40.97
Bra034120.1-P	Field mustard	cytosol, nucleus, plastid	40.33	40.78
PGSC0003DMT400079791	Potato	nucleus	29.47	40.0
PGSC0003DMT400060087	Potato	nucleus	28.18	39.13
KRG92121	Soybean	cytosol	36.83	33.11
TraesCS7B01G196900.1	Wheat	nucleus	35.73	30.17
Os08t0562200-02	Rice	nucleus	36.28	30.03
PGSC0003DMT400045129	Potato	nucleus	18.42	30.03
TraesCS7D01G283800.1	Wheat	nucleus	35.54	29.88
HORVU7Hr1G060310.1	Barley	nucleus	35.17	29.57
OQU80699	Sorghum	plastid	36.1	29.25
Os02t0822400-01	Rice	nucleus	33.52	28.8
Zm00001d031898_P001	Maize	plastid	35.36	28.74
HORVU6Hr1G093050.4	Barley	cytosol, golgi, nucleus	33.52	28.39
TraesCS6D01G390200.1	Wheat	cytosol, nucleus, peroxisome	33.52	28.35
TraesCS6A01G406700.1	Wheat	cytosol, golgi, nucleus	33.33	28.11
Zm00001d049913_P001	Maize	plastid	32.97	28.06
TraesCSU01G135000.1	Wheat	nucleus	35.91	27.5
EES06041	Sorghum	nucleus	32.97	27.45
Zm00001d051879_P001	Maize	nucleus	32.78	27.09
GSMUA_Achr9P20400_001	Banana	nucleus, peroxisome, plastid	28.36	25.67
GSMUA_AchrUn_...	Banana	nucleus	22.47	25.52
GSMUA_Achr9P23580_001	Banana	plastid	27.44	25.13
TraesCS6B01G451300.1	Wheat	nucleus	27.99	23.71
GSMUA_Achr2P04010_001	Banana	plastid	27.62	23.4
PGSC0003DMT400055322	Potato	nucleus	23.39	22.6
PGSC0003DMT400050482	Potato	nucleus	17.86	22.56
PGSC0003DMT400015077	Potato	nucleus	16.94	22.55
PGSC0003DMT400073779	Potato	nucleus	21.55	21.59
PGSC0003DMT400043681	Potato	nucleus	22.84	21.16
PGSC0003DMT400069511	Potato	nucleus	21.18	18.25
PGSC0003DMT400001498	Potato	nucleus	20.99	17.87
PGSC0003DMT400079995	Potato	nucleus	23.94	14.43

Protein Annotations

EntrezGene:102582253	MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	InterPro:IPR003441	InterPro:IPR036093	UniProt:M1D2F9	InterPro:NAC-dom
InterPro:NAC_dom_sf	PFAM:PF02365	EnsemblPlantsGene:PGSC0003DMG400031071	PGSC:PGSC0003DMG400031071	EnsemblPlants:PGSC0003DMT400079789	PFscan:PS51005
PANTHER:PTHR31989	PANTHER:PTHR31989:SF43	SUPFAM:SSF101941	TMHMM:TMhelix	UniParc:UPI000295C923	RefSeq:XP_006361710.1
SEG:seg	:	:	:	:	:

Description

Nam 9 [Source:PGSC_GENE;Acc:PGSC0003DMG400031071]

Coordinates

chr11:+:3999104..4005372

Molecular Weight (calculated)

61097.0 Da

IEP (calculated)

4.436

GRAVY (calculated)

-0.553

Length

543 amino acids

Sequence
(BLAST)

001: MESRGSSKLL APGFRFHPTD EELVRYYLRR KIYGRTFKSD LISEIDIYKV EPWDLPGMSR LKTRDLEWYF FSVLDKKYGN GARTNRATEK GYWKTTGKDR
101: AVHRNKSQVV GMKKTLVYHN GRAPKGQRTN WVMHEYRLID EALDNAGIPQ DAFVLCRVFQ KSGAGPKNGE QYGAPFIEEE WEDDELQVLP KDETAEDFVF
201: GDDIYLDANE LDQILGTDKA VAGASLPLDY SFGENGSTEE TNNSSDAQNW LQQPDELKPI DLAVQQNFNA EQVNHEYIGE SSKNMNSEDG DYLLNEPIVN
301: GTDDLQFNDE AFLEANDLSN PVQVDSSGFD MFEEYLTYFD ANDDFQNMSF DPSVFFGNDD QISDQALLPE KDVGEVTQQP IAPNEGFGED KNGFAASSKL
401: VPTKFGSDYQ LPFMKQASQM LGNIHAPPAF ASEFPTKDAI LRLNSLSRSA SPVQVTADLI RIRDMSAGGN GTRWPLGKHV YYNIILSLGL SRSSSDDSSM
501: DSFHSIHPGK TTSTISRGWF CYLFFSFLML LMSLRIGTTI CAS

Best Arabidopsis Sequence Match ( AT5G04410.1 )
(BLAST)

001: MGRGSVTSLA PGFRFHPTDE ELVRYYLKRK VCNKPFKFDA ISVTDIYKSE PWDLPDKSKL KSRDLEWYFF SMLDKKYSNG SKTNRATEKG YWKTTGKDRE
101: IRNGSRVVGM KKTLVYHKGR APRGERTNWV MHEYRLSDED LKKAGVPQEA YVLCRIFQKS GTGPKNGEQY GAPYLEEEWE EDGMTYVPAQ DAFSEGLALN
201: DDVYVDIDDI DEKPENLVVY DAVPILPNYC HGESSNNVES GNYSDSGNYI QPGNNVVDSG GYFEQPIETF EEDRKPIIRE GSIQPCSLFP EEQIGCGVQD
301: ENVVNLESSN NNVFVADTCY SDIPIDHNYL PDEPFMDPNN NLPLNDGLYL ETNDLSCAQQ DDFNFEDYLS FFDDEGLTFD DSLLMGPEDF LPNQEALDQK
401: PAPKELEKEV AGGKEAVEEK ESGEGSSSKQ DTDFKDFDSA PKYPFLKKTS HMLGAIPTPS SFASQFQTKD AMRLHAAQSS GSVHVTAGMM RISNMTLAAD
501: SGMGWSYDKN GNLNVVLSFG VVQQDDAMTA SGSKTGITAT RAMLVFMCLW VLLLSVSFKI VTMVSAR

Arabidopsis Description

NAC078NAC domain-containing protein 78 [Source:UniProtKB/Swiss-Prot;Acc:Q84K00]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.