Factsheet for VIT_13s0019g05240.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY70627	Canola	cytosol	22.54	76.36
KRH34662	Soybean	cytosol	11.45	70.33
PGSC0003DMT400060090	Potato	nucleus	51.34	53.64
Solyc05g055470.2.1	Tomato	nucleus	51.7	53.12
Solyc11g008000.1.1	Tomato	nucleus	47.76	50.57
AT3G10500.1	Thale cress	cytosol, nucleus, vacuole	48.66	49.54
PGSC0003DMT400079789	Potato	cytosol, nucleus, plastid	47.94	49.36
CDY58437	Canola	cytosol, nucleus, plastid	48.3	48.56
CDX70227	Canola	cytosol, nucleus, vacuole	47.41	47.83
CDY61762	Canola	cytosol, nucleus, plastid	44.36	47.78
CDY44853	Canola	cytosol, nucleus, vacuole	47.59	47.5
Bra009456.1-P	Field mustard	cytosol, nucleus, plastid	47.05	47.47
Bra028790.1-P	Field mustard	cytosol, nucleus, plastid	42.58	47.22
CDY14157	Canola	cytosol, nucleus, vacuole	43.47	47.09
AT5G04410.1	Thale cress	cytosol, nucleus, plastid	47.59	46.91
CDY41354	Canola	cytosol, nucleus, plastid	44.72	46.55
CDY11289	Canola	cytosol, nucleus, vacuole	47.05	46.47
Bra034120.1-P	Field mustard	cytosol, nucleus, plastid	44.54	46.37
Bra005804.1-P	Field mustard	cytosol, nucleus, vacuole	46.69	46.03
VIT_15s0048g02310.t01	Wine grape	cytosol	13.06	44.24
VIT_17s0053g00740.t01	Wine grape	nucleus	18.6	43.7
KRG92121	Soybean	cytosol	43.47	40.23
VIT_19s0085g00950.t01	Wine grape	nucleus	18.78	37.37
VIT_13s0019g05230.t01	Wine grape	nucleus	26.65	34.49
Os02t0822400-01	Rice	nucleus	35.6	31.49
EES06041	Sorghum	nucleus	36.49	31.29
HORVU6Hr1G093050.4	Barley	cytosol, golgi, nucleus	35.6	31.05
Zm00001d051879_P001	Maize	nucleus	36.14	30.75
VIT_02s0012g01040.t01	Wine grape	nucleus	19.86	30.41
TraesCS6D01G390200.1	Wheat	cytosol, nucleus, peroxisome	34.7	30.22
TraesCS6A01G406700.1	Wheat	cytosol, golgi, nucleus	34.7	30.12
TraesCS7B01G196900.1	Wheat	nucleus	33.27	28.93
TraesCS7D01G283800.1	Wheat	nucleus	33.27	28.79
Os08t0562200-02	Rice	nucleus	33.45	28.51
HORVU7Hr1G060310.1	Barley	nucleus	32.92	28.48
Zm00001d049913_P001	Maize	plastid	32.38	28.37
OQU80699	Sorghum	plastid	33.99	28.36
Zm00001d031898_P001	Maize	plastid	33.81	28.29
VIT_15s0048g02290.t01	Wine grape	nucleus	16.1	28.04
GSMUA_AchrUn_...	Banana	nucleus	23.26	27.2
GSMUA_Achr9P20400_001	Banana	nucleus, peroxisome, plastid	28.62	26.67
GSMUA_Achr9P23580_001	Banana	plastid	28.26	26.64
TraesCSU01G135000.1	Wheat	nucleus	33.45	26.38
TraesCS6B01G451300.1	Wheat	nucleus	30.05	26.21
GSMUA_Achr2P04010_001	Banana	plastid	28.62	24.96
VIT_06s0080g00970.t01	Wine grape	nucleus	16.82	24.23
VIT_04s0044g01220.t01	Wine grape	nucleus	24.15	24.11
VIT_18s0001g01820.t01	Wine grape	nucleus	23.79	23.25
VIT_15s0048g02320.t01	Wine grape	nucleus	14.49	22.95
VIT_04s0079g00280.t01	Wine grape	cytosol, nucleus, plasma membrane	25.76	21.56
VIT_15s0048g02300.t01	Wine grape	nucleus	16.28	20.73
VIT_15s0048g02280.t01	Wine grape	golgi, nucleus, plasma membrane	18.43	20.16
VIT_16s0098g00760.t01	Wine grape	mitochondrion	22.54	19.57
VIT_02s0025g03020.t01	Wine grape	nucleus	20.21	17.88
VIT_15s0048g02270.t01	Wine grape	nucleus	18.43	16.4

Protein Annotations

EntrezGene:100242836	wikigene:100242836	MapMan:15.5.17	Gene3D:3.30.310.150	EMBL:AM466875	ProteinID:CAN70406
ProteinID:CAN70406.1	ProteinID:CBI31389	ProteinID:CBI31389.3	UniProt:D7TM22	EMBL:FN595998	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	InterPro:IPR003441	InterPro:IPR036093
EntrezGene:LOC100242836	wikigene:LOC100242836	InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005
PANTHER:PTHR31989	PANTHER:PTHR31989:SF43	SUPFAM:SSF101941	TIGR:TC59843	TIGR:TC60012	TMHMM:TMhelix
UniParc:UPI00015C9745	ArrayExpress:VIT_13s0019g05240	EnsemblPlantsGene:VIT_13s0019g05240	EnsemblPlants:VIT_13s0019g05240.t01	unigene:Vvi.3307	RefSeq:XP_002265345
RefSeq:XP_002265345.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr13:+:7055933..7061987

Molecular Weight (calculated)

62302.4 Da

IEP (calculated)

4.228

GRAVY (calculated)

-0.497

Length

559 amino acids

Sequence
(BLAST)

001: MGRESAASLA PGFRFHPTDE ELVWYYLKRK VCGKLFRFDT ISEIDIYKSE PWDLPGQSKL KSRDLEWYFF SVLDKKYGNG SRTNRATDRG YWKTTGKDRE
101: VRHRARTVGM KKTLVYHSGR APRGERTNWV MHEYRLMDEE LKKTGVAQDA FVLCRIFQKS GSGPKNGEQY GAPFVEEEWD EDEDVVVFVP GELAAEEVVA
201: GHEPSDEAVD LEKCLDIGLP PENDPLPLNF YYGDCSKYAE DSRVFNENEQ KPFIGMEENH CGSELPNDQK IFDLSEQYEV DAKSVKDEYY VEQSNDVNSV
301: EVDYLLDEPY LDASENLAFE DGFFLETDDL SNPVETDPSG FDIDEYLAFL DADGDNLQQM AFGSFEMMGS ENPLSDLAPL DQEPVNGGAE KLPIGSQQLS
401: EAYGDSGASS SKKNPEATEF ESDIPYPFIK QASYQLLGGI PAPFASASDA PTKDVALRLN SAMQSSSSVH LTAGMIQIRD TTLSGNGVDW SYGKSGNINF
501: MLSFGLPQGE TNSASLEPIA SLMSGKAGPV ISRAGFYLIF IWVLILSVSY KIGTCICSR

Best Arabidopsis Sequence Match ( AT5G04410.1 )
(BLAST)

001: MGRGSVTSLA PGFRFHPTDE ELVRYYLKRK VCNKPFKFDA ISVTDIYKSE PWDLPDKSKL KSRDLEWYFF SMLDKKYSNG SKTNRATEKG YWKTTGKDRE
101: IRNGSRVVGM KKTLVYHKGR APRGERTNWV MHEYRLSDED LKKAGVPQEA YVLCRIFQKS GTGPKNGEQY GAPYLEEEWE EDGMTYVPAQ DAFSEGLALN
201: DDVYVDIDDI DEKPENLVVY DAVPILPNYC HGESSNNVES GNYSDSGNYI QPGNNVVDSG GYFEQPIETF EEDRKPIIRE GSIQPCSLFP EEQIGCGVQD
301: ENVVNLESSN NNVFVADTCY SDIPIDHNYL PDEPFMDPNN NLPLNDGLYL ETNDLSCAQQ DDFNFEDYLS FFDDEGLTFD DSLLMGPEDF LPNQEALDQK
401: PAPKELEKEV AGGKEAVEEK ESGEGSSSKQ DTDFKDFDSA PKYPFLKKTS HMLGAIPTPS SFASQFQTKD AMRLHAAQSS GSVHVTAGMM RISNMTLAAD
501: SGMGWSYDKN GNLNVVLSFG VVQQDDAMTA SGSKTGITAT RAMLVFMCLW VLLLSVSFKI VTMVSAR

Arabidopsis Description

NAC078NAC domain-containing protein 78 [Source:UniProtKB/Swiss-Prot;Acc:Q84K00]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.