Factsheet for VIT_02s0012g01040.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04320	Soybean	nucleus	63.01	67.25
KRH58218	Soybean	nucleus	62.74	66.38
PGSC0003DMT400045129	Potato	nucleus	57.26	62.76
Solyc08g077110.2.1	Tomato	nucleus	58.36	62.65
CDX90431	Canola	nucleus	47.12	60.14
Bra012626.1-P	Field mustard	nucleus	46.85	59.79
CDY01508	Canola	nucleus	46.58	59.44
AT4G17980.2	Thale cress	nucleus	46.85	58.56
Solyc06g061080.2.1	Tomato	nucleus	53.7	58.16
CDX77674	Canola	nucleus	44.11	56.69
Bra025012.1-P	Field mustard	nucleus	44.93	56.55
Bra013272.1-P	Field mustard	nucleus	45.21	56.51
CDX78816	Canola	nucleus	44.93	56.16
CDY63046	Canola	nucleus	44.38	55.86
CDY44498	Canola	nucleus	44.66	55.82
GSMUA_Achr3P18070_001	Banana	nucleus	36.99	54.44
CDY59580	Canola	nucleus	43.29	53.74
Bra022046.1-P	Field mustard	nucleus	43.29	53.74
AT5G46590.1	Thale cress	nucleus	42.74	53.42
CDX87703	Canola	nucleus	42.74	53.06
AT1G32510.1	Thale cress	nucleus	39.18	50.53
VIT_17s0053g00740.t01	Wine grape	nucleus	32.88	50.42
CDY66060	Canola	nucleus	39.45	50.35
CDY67205	Canola	nucleus	39.45	50.35
CDX84070	Canola	nucleus	38.63	49.82
Bra035488.1-P	Field mustard	nucleus	38.9	49.65
VIT_15s0048g02310.t01	Wine grape	cytosol	20.27	44.85
GSMUA_Achr5P03360_001	Banana	nucleus	43.29	44.13
GSMUA_Achr5P18140_001	Banana	nucleus	43.56	42.51
Zm00001d047050_P001	Maize	cytosol, nucleus, plastid	35.89	42.12
VIT_19s0085g00950.t01	Wine grape	nucleus	32.33	41.99
TraesCS1A01G190100.1	Wheat	nucleus	38.36	41.79
GSMUA_Achr11P...	Banana	nucleus	44.93	41.41
Zm00001d030023_P001	Maize	cytosol, nucleus, plastid	38.08	40.52
EER94455	Sorghum	nucleus	39.18	40.51
HORVU1Hr1G049840.3	Barley	cytosol	37.81	38.66
TraesCS1B01G192200.1	Wheat	cytosol, nucleus, plastid	38.08	38.08
TraesCS1D01G194200.2	Wheat	cytosol, nucleus, plastid	38.08	37.87
VIT_15s0048g02290.t01	Wine grape	nucleus	23.84	27.1
TraesCSU01G163300.1	Wheat	cytoskeleton, nucleus, peroxisome	27.4	24.45
TraesCSU01G168500.1	Wheat	cytoskeleton, nucleus, peroxisome	27.4	24.45
TraesCSU01G215800.1	Wheat	cytoskeleton, nucleus, peroxisome	27.4	24.45
VIT_06s0080g00970.t01	Wine grape	nucleus	25.75	24.23
VIT_13s0019g05230.t01	Wine grape	nucleus	26.85	22.69
VIT_15s0048g02320.t01	Wine grape	nucleus	21.37	22.1
VIT_04s0079g00280.t01	Wine grape	cytosol, nucleus, plasma membrane	39.18	21.41
VIT_13s0019g05240.t01	Wine grape	cytosol, nucleus, plastid	30.41	19.86
VIT_15s0048g02300.t01	Wine grape	nucleus	23.01	19.13
VIT_04s0044g01220.t01	Wine grape	nucleus	29.32	19.11
VIT_15s0048g02280.t01	Wine grape	golgi, nucleus, plasma membrane	25.75	18.4
VIT_18s0001g01820.t01	Wine grape	nucleus	27.12	17.31
VIT_02s0025g03020.t01	Wine grape	nucleus	27.95	16.14
VIT_16s0098g00760.t01	Wine grape	mitochondrion	28.22	15.99
VIT_15s0048g02270.t01	Wine grape	nucleus	25.21	14.65

Protein Annotations

EntrezGene:100255731	wikigene:100255731	MapMan:15.5.17	Gene3D:3.30.310.150	EMBL:AM430945	ProteinID:CAN78113
ProteinID:CAN78113.1	ProteinID:CBI33904	ProteinID:CBI33904.3	UniProt:D7TTY9	EMBL:FN596247	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR003441	InterPro:IPR036093	EntrezGene:LOC100255731	wikigene:LOC100255731
InterPro:NAC-dom	InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR31989	PANTHER:PTHR31989:SF51
SUPFAM:SSF101941	UniParc:UPI0001BE44F1	ArrayExpress:VIT_02s0012g01040	EnsemblPlantsGene:VIT_02s0012g01040	EnsemblPlants:VIT_02s0012g01040.t01	unigene:Vvi.514
unigene:Vvi.558	RefSeq:XP_002280894	RefSeq:XP_002280894.2	:	:	:

Description

No Description!

Coordinates

chr2:-:7008119..7010682

Molecular Weight (calculated)

41111.5 Da

IEP (calculated)

4.528

GRAVY (calculated)

-0.643

Length

365 amino acids

Sequence
(BLAST)

001: MGGASLPPGF RFHPTDEELV GYYLKRKVEG QKFELEVIPV IDLYKFDPWE LPDKSFLPKR DMEWFFFCPR DRKYPNGSRT NRATRAGYWK ATGKDRKVVA
101: CQSTVIGYRK TLVFYRGRAP LGDRTDWVMH EYRLCDDPSQ GSGFQGAFAL CRVVKKNDPT QKSSDFHGEA KGKQVGSSSS NGDFTSAAIS NEILSISDNI
201: PSQASHAYNE SNYSSPMASP YEAARPVDFE LSSKGTNPTD FWVSPDLILD SSKDYQQGQE TVSEFVPQYD FANSMSSWNP YSEISPCSSY SNFPGEVEFA
301: DDFSRIGCMS PYSGDPNYMG FYGNEDVPYE GFENQVPICR QESGDESFGE CSGLWLQEDN LVIVM

Best Arabidopsis Sequence Match ( AT4G17980.2 )
(BLAST)

001: MGSSCLPPGF RFHPTDEELI GYYLSRKIEG LEIELEVIPV IDLYKFDPWE LPGKSFLPNR DLEWFFFCPR DKKYANGSRT NRATKAGYWK ATGKDRKITC
101: KSSHVIAGYR KTLVFYEGRA PLGDRTNWFM HEYRLCDIDD HSQKSPNFKG AFALCRVVKK NELKKNSKSL KNKNEQDIGS CYSSLATSPC RDEASQIQSF
201: KPSSTTNDSS SIWISPDFIL DSSKDYPQIK EVASECFPNY HFPVTTANHH VEFPVSSCYF NVDQDIDQSM QTGYWTNYEN DQTGSFDYSN LF

Arabidopsis Description

anac071NAC domain containing protein 71 [Source:TAIR;Acc:AT4G17980]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.