Factsheet for VIT_18s0001g01820.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46459	Canola	nucleus	28.5	53.62
KRH35027	Soybean	nucleus	48.95	50.0
KRG91745	Soybean	nucleus	47.55	49.54
Solyc04g072220.2.1	Tomato	cytosol, nucleus, plastid	51.4	49.08
PGSC0003DMT400043681	Potato	nucleus	50.0	48.81
Solyc12g056790.1.1	Tomato	nucleus	49.65	48.14
AT1G34190.1	Thale cress	nucleus	45.98	47.22
VIT_15s0048g02310.t01	Wine grape	cytosol	13.46	46.67
Bra036744.1-P	Field mustard	nucleus	43.36	45.34
CDX91785	Canola	nucleus	42.66	45.27
CDX93723	Canola	nucleus	43.36	44.6
CDX73305	Canola	nucleus	40.56	44.53
CDY48632	Canola	cytosol, nucleus, plastid	43.71	44.41
Bra028039.1-P	Field mustard	nucleus	42.83	44.06
VIT_17s0053g00740.t01	Wine grape	nucleus	17.83	42.86
CDY28401	Canola	cytosol, nucleus, plastid	40.91	42.86
Bra034436.1-P	Field mustard	cytosol, nucleus, plastid	40.56	42.49
AT1G34180.2	Thale cress	nucleus	41.96	41.67
CDX73304	Canola	nucleus	42.13	41.34
CDY28397	Canola	nucleus	41.08	40.66
Bra034439.1-P	Field mustard	nucleus	41.08	40.66
CDY25752	Canola	nucleus	35.31	39.69
Bra012342.1-P	Field mustard	nucleus	35.31	39.69
GSMUA_Achr8P24280_001	Banana	nucleus	38.81	37.82
CDY12515	Canola	plastid	35.66	37.43
GSMUA_AchrUn_...	Banana	nucleus	36.54	36.73
AT1G32870.3	Thale cress	nucleus	35.66	36.17
VIT_19s0085g00950.t01	Wine grape	nucleus	17.66	35.94
PGSC0003DMT400079995	Potato	nucleus	51.4	32.63
VIT_02s0012g01040.t01	Wine grape	nucleus	17.31	27.12
Os09t0493700-01	Rice	nucleus	32.17	26.21
VIT_15s0048g02290.t01	Wine grape	nucleus	14.69	26.17
VIT_13s0019g05230.t01	Wine grape	nucleus	19.23	25.46
TraesCS5D01G279100.2	Wheat	nucleus, peroxisome, plastid	29.9	25.04
KXG35937	Sorghum	nucleus	30.94	24.96
VIT_15s0048g02320.t01	Wine grape	nucleus	15.21	24.65
TraesCS5A01G271500.2	Wheat	nucleus	31.29	24.52
VIT_06s0080g00970.t01	Wine grape	nucleus	16.61	24.48
VIT_13s0019g05240.t01	Wine grape	cytosol, nucleus, plastid	23.25	23.79
HORVU5Hr1G074230.30	Barley	nucleus, plastid	31.29	23.61
VIT_04s0079g00280.t01	Wine grape	cytosol, nucleus, plasma membrane	24.83	21.26
VIT_15s0048g02280.t01	Wine grape	golgi, nucleus, plasma membrane	18.36	20.55
VIT_15s0048g02300.t01	Wine grape	nucleus	15.21	19.82
VIT_04s0044g01220.t01	Wine grape	nucleus	18.53	18.93
VIT_02s0025g03020.t01	Wine grape	nucleus	20.8	18.83
TraesCS5B01G271800.1	Wheat	cytosol, golgi, peroxisome	17.66	17.21
VIT_15s0048g02270.t01	Wine grape	nucleus	18.53	16.88
VIT_16s0098g00760.t01	Wine grape	mitochondrion	18.71	16.61

Protein Annotations

EntrezGene:100249427	wikigene:100249427	MapMan:15.5.17	Gene3D:3.30.310.150	ProteinID:CBI29338	ProteinID:CBI29338.3
UniProt:D7TFR5	EMBL:FN595772	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	InterPro:IPR003441	InterPro:IPR036093	EntrezGene:LOC100249427	wikigene:LOC100249427	InterPro:NAC-dom
InterPro:NAC_dom_sf	PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR31989	PANTHER:PTHR31989:SF27	SUPFAM:SSF101941
TIGR:TC65879	TMHMM:TMhelix	UniParc:UPI00019859B2	ArrayExpress:VIT_18s0001g01820	EnsemblPlantsGene:VIT_18s0001g01820	EnsemblPlants:VIT_18s0001g01820.t01
unigene:Vvi.22179	RefSeq:XP_002265611	RefSeq:XP_002265611.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr18_random:-:2336910..2342380

Molecular Weight (calculated)

63331.2 Da

IEP (calculated)

4.486

GRAVY (calculated)

-0.481

Length

572 amino acids

Sequence
(BLAST)

001: MKVTVGDSSP CFDGDEKSAW PPGFRFHPTD EELVLYYLKK KICRRRLKLD IIAEVDVYKW DPEDLPGLSK LKTGDRQWFF FSPRDRKYPN GARSNRATRH
101: GYWKATGKDR TISCNIRSVG VKKTLVFYKG RAPSKERTDW VMHEYTMDEE ELKRCPNVQD YYALYKVFKK SGPGPKNGEQ YGAPFKEEEW ADEDDLDVSN
201: YSVEETPPEQ LNGVISVNNS KPNGQDCQAD AWDDIWKGLA EAPPVVPLRV DDYVNLLAQV IGEEEAQTPL VDSSLNGAFV ADPISTVLTP TSQQYAVPEN
301: VEFTQSASSQ LQLHEAPEVT SAPNISEQER GLSEEDFLEM DDLLGPEPIP QNYEKTEENL QFEGDGLSIL DLYHDAAMFL RDIGPIDQGT VPHPYLNTIE
401: NEMVNQLNYQ LQPHSVGADQ ISGQLWTLDQ SVCTSAESIQ GIIGQPTSGV VYASSSTNVP TEGNQNMNGE GGNGAGNRFT SALWSFVESI PTTPASASEN
501: ALVNRALVRM SSFSRMRMNA LNTNAGNGGA ATWKGGINKG GFIILSVIGA LIAIFWVLML GPVKMLGRCL PS

Best Arabidopsis Sequence Match ( AT1G34190.1 )
(BLAST)

001: MADSSPDSCF KGGKFSAPGF RFHPTDEELV MYYLKRKICR KRLRVNVIGV VDVYKMDPEE LPGQSMLKTG DRQWFYFTPR SRKYPNAARS NRGTENGYWK
101: ATGKDRVIEY NSRSVGLKKT LVFYRGRAPS GERTDWVMHE YTMDEDELGR CKNPQEYYAL YKLFKKSGAG PKNGEQYGAP FQEEEWVDDD NEDVNAIAVA
201: VPEQPVVRYE DARRVDERRL FNPVILQLED IDELLNGIPN APGVPQRCIP QVNSEEELQS TLVNNSAREF LPNGQQYNRP SSFDSLETAE VTSAPLVFEK
301: EDFIEMDDLL LIPEFGASST EKAAQFSNHG EFDDFNEFDQ LFHDVSMSLD MEPIDQGTSA NLSSLSDSAN YTSDQKQQLL YQQFQDQTPE NQLNNIMDPS
401: TTLNQITSDI WFEDDQAILF DQQQSFSGAF ASPSSGVMPD STNPTMSVNA QGHEIQNGGG TTSQFSSALW ALMDSIPSTP ASACEGPLNR TFVRMSSFSR
501: MRFNGKANGT PVSTTIAKKG IRNRGFLLLS IVGALCAIFW VLVATVRVSG RSLLLKD

Arabidopsis Description

NAC017NAC017 [Source:UniProtKB/TrEMBL;Acc:A0A178WNW4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.