Factsheet for PGSC0003DMT400060090

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g055470.2.1	Tomato	nucleus	94.77	93.2
KRH34662	Soybean	cytosol	11.59	68.13
CDY70627	Canola	cytosol	20.93	67.88
PGSC0003DMT400079789	Potato	cytosol, nucleus, plastid	64.3	63.35
PGSC0003DMT400018364	Potato	mitochondrion, nucleus	11.78	54.31
VIT_13s0019g05240.t01	Wine grape	cytosol, nucleus, plastid	53.64	51.34
AT3G10500.1	Thale cress	cytosol, nucleus, vacuole	45.61	44.44
Bra028790.1-P	Field mustard	cytosol, nucleus, plastid	40.56	43.06
AT5G04410.1	Thale cress	cytosol, nucleus, plastid	45.42	42.86
CDY58437	Canola	cytosol, nucleus, plastid	44.3	42.63
CDX70227	Canola	cytosol, nucleus, vacuole	44.11	42.6
Bra009456.1-P	Field mustard	cytosol, nucleus, plastid	44.11	42.6
CDY44853	Canola	cytosol, nucleus, vacuole	44.49	42.5
CDY14157	Canola	cytosol, nucleus, vacuole	40.75	42.25
CDY61762	Canola	cytosol, nucleus, plastid	40.75	42.0
CDY41354	Canola	cytosol, nucleus, plastid	41.5	41.34
Bra034120.1-P	Field mustard	cytosol, nucleus, plastid	41.5	41.34
PGSC0003DMT400079791	Potato	nucleus	30.65	41.0
CDY11289	Canola	cytosol, nucleus, vacuole	43.36	40.99
Bra005804.1-P	Field mustard	cytosol, nucleus, vacuole	43.36	40.92
PGSC0003DMT400079749	Potato	nucleus	18.69	40.0
PGSC0003DMT400060087	Potato	nucleus	28.41	38.87
KRG92121	Soybean	cytosol	41.12	36.42
Os02t0822400-01	Rice	nucleus	36.45	30.85
HORVU6Hr1G093050.4	Barley	cytosol, golgi, nucleus	36.26	30.27
TraesCS6D01G390200.1	Wheat	cytosol, nucleus, peroxisome	35.51	29.59
Zm00001d051879_P001	Maize	nucleus	35.89	29.22
TraesCS6A01G406700.1	Wheat	cytosol, golgi, nucleus	35.14	29.19
EES06041	Sorghum	nucleus	35.33	28.99
TraesCS7D01G283800.1	Wheat	nucleus	34.39	28.48
TraesCS7B01G196900.1	Wheat	nucleus	34.21	28.46
PGSC0003DMT400045129	Potato	nucleus	17.57	28.23
HORVU7Hr1G060310.1	Barley	nucleus	34.02	28.17
OQU80699	Sorghum	plastid	35.14	28.06
Os08t0562200-02	Rice	nucleus	34.02	27.74
Zm00001d031898_P001	Maize	plastid	34.39	27.54
Zm00001d049913_P001	Maize	plastid	32.52	27.27
TraesCSU01G135000.1	Wheat	nucleus	34.39	25.95
GSMUA_Achr9P20400_001	Banana	nucleus, peroxisome, plastid	28.41	25.33
GSMUA_AchrUn_...	Banana	nucleus	22.62	25.31
GSMUA_Achr9P23580_001	Banana	plastid	28.04	25.3
TraesCS6B01G451300.1	Wheat	nucleus	30.09	25.12
GSMUA_Achr2P04010_001	Banana	plastid	29.35	24.49
PGSC0003DMT400015077	Potato	nucleus	17.38	22.79
PGSC0003DMT400073779	Potato	nucleus	22.43	22.14
PGSC0003DMT400050482	Potato	nucleus	17.76	22.09
PGSC0003DMT400055322	Potato	nucleus	23.18	22.06
PGSC0003DMT400043681	Potato	nucleus	23.93	21.84
PGSC0003DMT400069511	Potato	nucleus	21.12	17.94
PGSC0003DMT400001498	Potato	nucleus	20.19	16.93
PGSC0003DMT400079995	Potato	nucleus	24.86	14.76

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	InterPro:IPR003441	InterPro:IPR036093	UniProt:M1C572	InterPro:NAC-dom	InterPro:NAC_dom_sf
PFAM:PF02365	EnsemblPlantsGene:PGSC0003DMG402023373	PGSC:PGSC0003DMG402023373	EnsemblPlants:PGSC0003DMT400060090	PFscan:PS51005	PANTHER:PTHR31989
PANTHER:PTHR31989:SF43	SUPFAM:SSF101941	TMHMM:TMhelix	UniParc:UPI000295ADBB	SEG:seg	:

Description

Nam 9 [Source:PGSC_GENE;Acc:PGSC0003DMG402023373]

Coordinates

chr5:-:51181263..51187357

Molecular Weight (calculated)

59699.6 Da

IEP (calculated)

4.384

GRAVY (calculated)

-0.498

Length

535 amino acids

Sequence
(BLAST)

001: MAPGFRFHPT DEELVRYYLR RKIIGKPLRF DAISEIDIYK VEPWDLPGMS RLKTRDLEWY FFSVLDRKHG NGAKTNRATE RGYWKTTGKD RAVHHKSKVV
101: GMKKTLVFHS GRAPKGQRTN WVMHEYKLID EELEKAGVVQ DALVLCRVFQ KSGAGPKNGE KYGAPFVEEE WEDDELEIVP KEEAAEEVEF GDDIYLDGHD
201: LEQILGADSP VDGAPLPLNC YSEGNASNSG DISNSFEEAQ NWLQQPDEQE SFDPAIQQIN ADTNPVKHEF MSEPSNSMNT EDVDYLLDEP VVTATDNLQF
301: SDGAFLEASD LSRPIEVNTS GFDMLEDYLT FFDADDNFQS MGFNPPMMTE GDDHVSDLAS PEEKNIGEVN DQPIAPSEEP EDQKKNVASS SKLEPSKFGS
401: DYKYPFMKQA SCMLGGIPAP PAFASEFPSK SAALRMNSSS EASSSIHVTG FIQITNMTMS GNGMDELVGK HGNYNVILSL GLSQHGDSSA HLESAVSFLP
501: GKTISTVSWC WFYYLFLWVL ILSTTFKVGT LIRAA

Best Arabidopsis Sequence Match ( AT5G04410.1 )
(BLAST)

001: MGRGSVTSLA PGFRFHPTDE ELVRYYLKRK VCNKPFKFDA ISVTDIYKSE PWDLPDKSKL KSRDLEWYFF SMLDKKYSNG SKTNRATEKG YWKTTGKDRE
101: IRNGSRVVGM KKTLVYHKGR APRGERTNWV MHEYRLSDED LKKAGVPQEA YVLCRIFQKS GTGPKNGEQY GAPYLEEEWE EDGMTYVPAQ DAFSEGLALN
201: DDVYVDIDDI DEKPENLVVY DAVPILPNYC HGESSNNVES GNYSDSGNYI QPGNNVVDSG GYFEQPIETF EEDRKPIIRE GSIQPCSLFP EEQIGCGVQD
301: ENVVNLESSN NNVFVADTCY SDIPIDHNYL PDEPFMDPNN NLPLNDGLYL ETNDLSCAQQ DDFNFEDYLS FFDDEGLTFD DSLLMGPEDF LPNQEALDQK
401: PAPKELEKEV AGGKEAVEEK ESGEGSSSKQ DTDFKDFDSA PKYPFLKKTS HMLGAIPTPS SFASQFQTKD AMRLHAAQSS GSVHVTAGMM RISNMTLAAD
501: SGMGWSYDKN GNLNVVLSFG VVQQDDAMTA SGSKTGITAT RAMLVFMCLW VLLLSVSFKI VTMVSAR

Arabidopsis Description

NAC078NAC domain-containing protein 78 [Source:UniProtKB/Swiss-Prot;Acc:Q84K00]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.