Factsheet for PGSC0003DMT400060087

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g055480.2.1	Tomato	nucleus	96.42	97.67
PGSC0003DMT400079791	Potato	nucleus	75.45	73.75
CDY41351	Canola	plastid	27.37	64.07
PGSC0003DMT400018364	Potato	mitochondrion, nucleus	16.11	54.31
CDY41352	Canola	nucleus	46.8	43.47
KRG92124	Soybean	nucleus	51.41	43.23
Bra034118.1-P	Field mustard	nucleus	46.29	42.99
KRH34660	Soybean	plastid	50.64	42.58
Bra001366.1-P	Field mustard	nucleus	45.01	41.81
CDY41353	Canola	nucleus	46.8	41.5
Bra034119.1-P	Field mustard	nucleus	46.55	41.36
PGSC0003DMT400079749	Potato	nucleus	25.83	40.4
CDY00676	Canola	nucleus	43.99	40.19
CDY00946	Canola	nucleus	46.29	40.13
VIT_13s0019g05230.t01	Wine grape	nucleus	44.25	40.05
CDY08601	Canola	nucleus, plastid	46.29	39.78
Bra029844.1-P	Field mustard	nucleus, plastid	46.29	39.78
AT3G10490.2	Thale cress	nucleus	45.78	39.69
Bra001365.1-P	Field mustard	nucleus	43.48	39.44
CDX73920	Canola	nucleus	44.5	38.93
CDY00677	Canola	nucleus	43.99	38.65
CDY70628	Canola	golgi	37.6	37.12
CDX73921	Canola	cytosol, nucleus, plastid	42.97	36.84
AT3G10480.3	Thale cress	plastid	45.78	34.03
PGSC0003DMT400045129	Potato	nucleus	25.06	29.43
PGSC0003DMT400060090	Potato	nucleus	38.87	28.41
PGSC0003DMT400079789	Potato	cytosol, nucleus, plastid	39.13	28.18
PGSC0003DMT400015077	Potato	nucleus	23.02	22.06
GSMUA_AchrUn_...	Banana	nucleus	26.85	21.97
Os02t0822400-01	Rice	nucleus	34.53	21.36
Zm00001d049913_P001	Maize	plastid	34.78	21.32
HORVU7Hr1G060310.1	Barley	nucleus	35.04	21.21
TraesCS6D01G390200.1	Wheat	cytosol, nucleus, peroxisome	34.78	21.18
TraesCS7B01G196900.1	Wheat	nucleus	34.78	21.15
HORVU6Hr1G093050.4	Barley	cytosol, golgi, nucleus	34.27	20.9
TraesCS7D01G283800.1	Wheat	nucleus	34.53	20.9
TraesCS6A01G406700.1	Wheat	cytosol, golgi, nucleus	34.27	20.81
Os08t0562200-02	Rice	nucleus	34.53	20.58
GSMUA_Achr9P23580_001	Banana	plastid	30.95	20.4
Zm00001d031898_P001	Maize	plastid	34.78	20.36
OQU80699	Sorghum	plastid	34.78	20.3
PGSC0003DMT400055322	Potato	nucleus	28.9	20.11
GSMUA_Achr9P20400_001	Banana	nucleus, peroxisome, plastid	30.69	20.0
PGSC0003DMT400050482	Potato	nucleus	21.99	20.0
EES06041	Sorghum	nucleus	33.25	19.94
PGSC0003DMT400073779	Potato	nucleus	27.62	19.93
Zm00001d051879_P001	Maize	nucleus	32.99	19.63
TraesCSU01G135000.1	Wheat	nucleus	34.53	19.04
GSMUA_Achr2P04010_001	Banana	plastid	29.41	17.94
PGSC0003DMT400043681	Potato	nucleus	26.6	17.75
TraesCS6B01G451300.1	Wheat	nucleus	27.62	16.85
PGSC0003DMT400001498	Potato	nucleus	27.11	16.61
PGSC0003DMT400069511	Potato	nucleus	26.6	16.51
PGSC0003DMT400079995	Potato	nucleus	28.39	12.32

Protein Annotations

EntrezGene:102601251	MapMan:15.5.17	Gene3D:3.30.310.150	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR003441	InterPro:IPR036093	UniProt:M1C569	InterPro:NAC-dom	InterPro:NAC_dom_sf
PFAM:PF02365	EnsemblPlantsGene:PGSC0003DMG401023373	PGSC:PGSC0003DMG401023373	EnsemblPlants:PGSC0003DMT400060087	PFscan:PS51005	PANTHER:PTHR31989
PANTHER:PTHR31989:SF43	SUPFAM:SSF101941	UniParc:UPI000295F09A	RefSeq:XP_006345842.1	SEG:seg	:

Description

Nam 8 [Source:PGSC_GENE;Acc:PGSC0003DMG401023373]

Coordinates

chr5:-:51188038..51192076

Molecular Weight (calculated)

43873.7 Da

IEP (calculated)

5.059

GRAVY (calculated)

-0.620

Length

391 amino acids

Sequence
(BLAST)

001: MEQEGSKGAV TVAAPAAAPT SLAPGFRFHP TDEELVRYYL RRKVCGKPFR FQAVTEIDVY KSEPCDLAEY SSVKSRDMEW YFFSPVDKKY CNGSRLNRAT
101: GQGYWKATGK DRHISHKSQA IGMKKTLVFH SGRAPDGKRT NWVMHEYRLA DKELEKAGIV QDSFVLCRIF QKSGLGPPTG DRYAPFIEEE WDDDSAVLPG
201: GETEDDAVNG VDARVESNDL DQDAPPKIAC DSENVIELQS LPFACKRERS EEPELLSLSQ TKKLKHDVPN SSRANGSEDS TITSQDPVNM MTTKDYPLAL
301: LGFPLLESFE PKDPQPSNTL TFDSSNLEKS VPPGYLKFIS NLETEILNVS MERETLKIEV MRAQAMINVL QSRIDLLTKE NEDMRKLVRG G

Best Arabidopsis Sequence Match ( AT3G10480.1 )
(BLAST)

001: MGRESLAVVS SPPSATAPST AVSATSLAPG FRFHPTDEEL VSYYLKRKVL GKPVRFDAIG EVDIYKHEPW DLAVFSKLKT RDQEWYFFSA LDKKYGNGAR
101: MNRATNKGYW KATGKDREIR RDIQLLGMKK TLVFHSGRAP DGLRTNWVMH EYRLVEYETE TNGSLLQDAY VLCRVFHKNN IGPPSGNRYA PFMEEEWADG
201: GGALIPGIDV RVRVEALPQA NGNNQMDQEM HSASKDLINI NELPRDATPM DIEPNQQNHH ESAFKPQESN NHSGYEEDED TLKREHAEED ERPPSLCILN
301: KEAPLPLLQY KRRRQNESNN NSSRNTQDHC SSTITTVDNT TTLISSSAAA ATNTAISALL EFSLMGISDK KENQQKEETS PPSPIASPEE KVNDLQKEVH
401: QMSVERETFK LEMMSAEAMI SILQSRIDAL RQENEELKKK NASGQAS

Arabidopsis Description

ANAC050NAC domain containing protein 50 [Source:UniProtKB/TrEMBL;Acc:F4J3S6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.