Factsheet for Solyc06g073050.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	peroxisome
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc11g006870.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49530.1	Solyc11g006870.1.1	AT5G19570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069511	Potato	nucleus	89.92	84.92
Solyc03g080090.2.1	Tomato	nucleus	50.25	47.54
Solyc03g078120.2.1	Tomato	cytosol	11.76	46.67
GSMUA_Achr11P...	Banana	cytosol	14.29	44.97
CDX88115	Canola	cytosol	28.07	37.7
Bra036520.1-P	Field mustard	nucleus	28.07	37.53
CDY19828	Canola	nucleus	28.07	37.53
AT5G24590.2	Thale cress	nucleus	28.24	37.25
Bra009774.1-P	Field mustard	nucleus	28.4	37.14
Solyc03g098190.2.1	Tomato	nucleus	15.13	36.14
CDX80455	Canola	nucleus	27.56	35.96
AT3G49530.1	Thale cress	nucleus	28.07	35.61
GSMUA_Achr2P11810_001	Banana	cytosol, mitochondrion, nucleus, plastid	16.97	34.83
CDY05939	Canola	nucleus	26.39	33.91
CDY08139	Canola	nucleus	26.39	33.84
CDY00208	Canola	nucleus	24.54	33.8
Bra019599.1-P	Field mustard	nucleus	24.54	33.8
Bra017980.1-P	Field mustard	nucleus	26.05	33.48
KRH72602	Soybean	nucleus	31.76	32.09
KRH53649	Soybean	nucleus	31.93	31.77
KRH16970	Soybean	nucleus	31.43	31.69
KRH64275	Soybean	nucleus	31.43	31.01
VIT_16s0098g00760.t01	Wine grape	mitochondrion	32.77	30.28
Solyc05g055480.2.1	Tomato	nucleus	17.82	27.46
Solyc08g077110.2.1	Tomato	nucleus	15.29	26.76
Solyc06g061080.2.1	Tomato	nucleus	14.45	25.52
Solyc06g074170.2.1	Tomato	nucleus	16.81	24.45
GSMUA_Achr1P03560_001	Banana	nucleus	23.03	23.87
OQU79937	Sorghum	nucleus	26.39	23.64
Zm00001d049540_P002	Maize	cytosol	26.22	23.6
Solyc11g068750.1.1	Tomato	nucleus, plasma membrane	17.82	23.45
GSMUA_Achr4P29170_001	Banana	nucleus	22.52	23.3
Solyc11g008010.1.1	Tomato	endoplasmic reticulum, plasma membrane	17.65	22.58
Zm00001d024543_P001	Maize	nucleus	24.87	22.29
Os08t0157900-01	Rice	nucleus, plasma membrane	26.05	21.26
TraesCS7B01G187600.1	Wheat	nucleus	24.87	21.11
TraesCS7A01G299600.3	Wheat	nucleus	24.87	21.11
HORVU7Hr1G070780.5	Barley	nucleus	24.71	20.88
TraesCS7D01G295100.1	Wheat	nucleus	24.37	20.86
Solyc05g055470.2.1	Tomato	nucleus	18.82	20.59
Solyc02g036430.1.1	Tomato	nucleus	19.5	20.53
CDX87118	Canola	nucleus	27.9	19.95
Solyc11g008000.1.1	Tomato	nucleus	17.65	19.89
GSMUA_AchrUn_...	Banana	extracellular, plasma membrane	24.37	19.1
Solyc12g056790.1.1	Tomato	nucleus	16.3	16.44
Solyc04g072220.2.1	Tomato	cytosol, nucleus, plastid	16.13	16.03
Solyc11g005920.1.1	Tomato	nucleus	16.64	14.41
Solyc02g081270.2.1	Tomato	nucleus	17.48	10.11

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020
GO:GO:0016021	InterPro:IPR003441	InterPro:IPR036093	UniProt:K4C925	InterPro:NAC-dom	InterPro:NAC_dom_sf
PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR31989	PANTHER:PTHR31989:SF14	SUPFAM:SSF101941	EnsemblPlantsGene:Solyc06g073050.2
EnsemblPlants:Solyc06g073050.2.1	TMHMM:TMhelix	UniParc:UPI0002765BC3	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:+:45006082..45009977

Molecular Weight (calculated)

65883.1 Da

IEP (calculated)

4.956

GRAVY (calculated)

-0.505

Length

595 amino acids

Sequence
(BLAST)

001: MTVTPVGNQV VEVPPLNTLP IGYRFRPTDE ELINHYLCLK INGCHDQVGV IREIDICKFE PWDLPDLSVV ESNDNEWFYF CPIDRKYQNG QRLNRATERG
101: YWKATGKDRN IATRKGAKIG MKKTLVYYNG RAPEGKRTNW VIHEYRATDK SLDGSRPGQG AFVLCRLFKK NELKQAENVE SSHFDEVEHL VSSPAVGISP
201: TDDGLSAVAL SPIMESESNK SNPPKTSGCK THDTRLSIDS CGNSCTAGDG EDLMVDITSG QPDLQIEELL GLFRDPSPEP IDWSPLHSQS QVEFGSSISH
301: GTMSNEINCD QKDVQCQNVI NDLNTNEFLN SILVSSDEFS YEDSEKELRS MWFASNSINT ITTAPVTDSG TCSVLKSQVT QEPVRRDIFE PELLLGNCGE
401: TALMREVNSV ATSVDEVFAT PYFRNDHSMG NVGTDSAFGI TLRTRRTQNQ PDNSQPGSGM QGTTVRRIRY QVKLQTGRVE RRMPTDSDQG GANHEGLSAV
501: SESEKFSNED SSSLSAAISS DVTQDTMCKE LKGDRQMAED LRSANVKDTN ALKRAALSSF SLSFYISKVF AVASLLIVFL GVCGFFKLRQ SASKL

Best Arabidopsis Sequence Match ( AT3G49530.1 )
(BLAST)

001: MNQNLHVLSM DSLPVGLRFR PTDEELIRYY LRRKINGHDD DVKAIREIDI CKWEPWDLPD FSVIKTKDSE WLYFCPLDRK YPSGSRQNRA TVAGYWKATG
101: KDRKIKSGKT NIIGVKRTLV FHAGRAPRGT RTNWIIHEYR ATEDDLSGTN PGQSPFVICK LFKKEELVLG EEDSKSDEVE EPAVSSPTVE VTKSEVSEVI
201: KTEDVKRHDI AESSLVISGD SHSDACDEAT TAELVDFKWY PELESLDFTL FSPLHSQVQS ELGSSYNTFQ PGSSNFSGNN NNSFQIQTQY GTNEVDTYIS
301: DFLDSILKSP DEDPEKHKYV LQSGFDVVAP DQIAQVCQQG SAVDMSNDVS VTGIQIKSRQ AQPSGYTNDY IAQGNGPRRL RLQSNFNGIN TKNPELQAIK
401: REAEDTVGES IKKRCGKLMR SKNVTGFVFK KITSVKCSYG GLFRAAVVAV VFLMSVCSLT VDFRASAVS

Arabidopsis Description

NAC062NAC domain-containing protein 62 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCK6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.