Subcellular Localization
min:
: max
Winner_takes_all: golgi, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34714 | Canola | cytosol, golgi, nucleus | 93.22 | 93.49 |
| CDY34716 | Canola | nucleus | 76.4 | 88.1 |
| AT3G44290.1 | Thale cress | cytosol | 86.43 | 87.46 |
| CDX70995 | Canola | cytosol | 64.9 | 65.87 |
| CDY35676 | Canola | cytoskeleton, cytosol, nucleus | 65.49 | 64.72 |
| CDY09128 | Canola | cytosol | 64.9 | 64.14 |
| CDX88803 | Canola | cytosol | 63.42 | 63.8 |
| CDX92368 | Canola | cytosol | 62.54 | 63.28 |
| CDY70627 | Canola | cytosol | 20.65 | 42.42 |
| CDY41351 | Canola | plastid | 20.65 | 41.92 |
| CDX71459 | Canola | cytosol, golgi, nucleus | 41.89 | 41.16 |
| CDY04487 | Canola | cytosol | 41.59 | 40.87 |
| CDY71253 | Canola | cytosol | 21.24 | 40.45 |
| VIT_06s0080g00970.t01 | Wine grape | nucleus | 41.89 | 36.6 |
| KRH22653 | Soybean | nucleus | 39.82 | 36.39 |
| PGSC0003DMT400015077 | Potato | nucleus | 41.0 | 34.07 |
| Solyc06g074170.2.1 | Tomato | nucleus | 40.71 | 33.74 |
| CDX95832 | Canola | nucleus | 22.42 | 33.63 |
| CDX92153 | Canola | nucleus | 22.42 | 33.63 |
| PGSC0003DMT400050482 | Potato | nucleus | 42.48 | 33.49 |
| Solyc11g068750.1.1 | Tomato | nucleus, plasma membrane | 42.18 | 31.64 |
| CDX77674 | Canola | nucleus | 25.37 | 30.28 |
| CDX90431 | Canola | nucleus | 25.07 | 29.72 |
| CDY63046 | Canola | nucleus | 25.37 | 29.66 |
| CDY01508 | Canola | nucleus | 24.78 | 29.37 |
| CDY66060 | Canola | nucleus | 24.78 | 29.37 |
| CDY67205 | Canola | nucleus | 24.78 | 29.37 |
| CDX84070 | Canola | nucleus | 24.48 | 29.33 |
| CDY59580 | Canola | nucleus | 25.37 | 29.25 |
| CDX87703 | Canola | nucleus | 24.78 | 28.57 |
| KRH26664 | Soybean | nucleus | 41.0 | 28.19 |
| CDY44498 | Canola | nucleus | 23.3 | 27.05 |
| CDX78816 | Canola | nucleus | 23.3 | 27.05 |
| CDY10502 | Canola | nucleus | 24.48 | 27.04 |
| CDX86970 | Canola | nucleus | 24.48 | 26.27 |
| CDY42413 | Canola | nucleus | 23.89 | 26.21 |
| CDX67739 | Canola | nucleus | 23.89 | 26.05 |
| CDX81124 | Canola | nucleus | 25.07 | 24.85 |
| CDY44793 | Canola | nucleus | 25.07 | 24.29 |
| CDY46459 | Canola | nucleus | 20.94 | 23.36 |
| CDY43785 | Canola | nucleus | 22.71 | 22.38 |
| CDX84485 | Canola | nucleus | 22.71 | 22.25 |
| CDY05939 | Canola | nucleus | 27.43 | 20.09 |
| CDY08139 | Canola | nucleus | 27.43 | 20.04 |
| CDY19828 | Canola | nucleus | 26.25 | 20.0 |
| CDY00676 | Canola | nucleus | 25.07 | 19.86 |
| CDY41352 | Canola | nucleus | 24.48 | 19.71 |
| CDX88115 | Canola | cytosol | 25.66 | 19.64 |
| CDY00208 | Canola | nucleus | 24.78 | 19.44 |
| CDX69911 | Canola | nucleus | 25.07 | 19.41 |
| CDX78356 | Canola | nucleus | 20.65 | 19.28 |
| CDX80455 | Canola | nucleus | 25.66 | 19.08 |
| CDY41353 | Canola | nucleus | 24.78 | 19.05 |
| CDY21575 | Canola | nucleus | 24.19 | 18.89 |
| CDX78734 | Canola | cytosol | 27.14 | 18.78 |
| CDX70745 | Canola | cytosol | 27.14 | 18.62 |
| CDY49932 | Canola | nucleus | 26.25 | 18.58 |
| CDY28745 | Canola | cytosol | 25.96 | 18.41 |
| CDY43143 | Canola | nucleus | 25.96 | 18.41 |
| CDY16943 | Canola | nucleus | 26.84 | 18.31 |
| CDY00677 | Canola | nucleus | 23.89 | 18.2 |
| CDX73920 | Canola | nucleus | 23.89 | 18.12 |
| CDX73921 | Canola | cytosol, nucleus, plastid | 24.19 | 17.98 |
| CDY00946 | Canola | nucleus | 23.89 | 17.96 |
| CDY08601 | Canola | nucleus, plastid | 23.89 | 17.8 |
| CDY25752 | Canola | nucleus | 24.19 | 16.11 |
| CDY14157 | Canola | cytosol, nucleus, vacuole | 24.48 | 16.09 |
| CDX70227 | Canola | cytosol, nucleus, vacuole | 26.25 | 16.07 |
| CDY61762 | Canola | cytosol, nucleus, plastid | 24.48 | 15.99 |
| CDY44853 | Canola | cytosol, nucleus, vacuole | 25.66 | 15.54 |
| CDY58437 | Canola | cytosol, nucleus, plastid | 25.37 | 15.47 |
| CDY60870 | Canola | nucleus | 26.25 | 15.42 |
| CDY11289 | Canola | cytosol, nucleus, vacuole | 25.66 | 15.37 |
| CDY12515 | Canola | plastid | 24.48 | 15.23 |
| CDX73305 | Canola | nucleus | 23.3 | 15.16 |
| CDY41354 | Canola | cytosol, nucleus, plastid | 23.89 | 15.08 |
| CDY16427 | Canola | nucleus | 26.25 | 14.96 |
| CDY70628 | Canola | golgi | 17.4 | 14.9 |
| CDY28401 | Canola | cytosol, nucleus, plastid | 23.89 | 14.84 |
| CDX93723 | Canola | nucleus | 24.19 | 14.75 |
| CDY66161 | Canola | nucleus | 27.43 | 14.65 |
| CDY26922 | Canola | nucleus | 27.43 | 14.62 |
| CDY28397 | Canola | nucleus | 24.48 | 14.36 |
| CDX73304 | Canola | nucleus | 24.48 | 14.24 |
| CDY48632 | Canola | cytosol, nucleus, plastid | 23.6 | 14.21 |
| CDX91785 | Canola | nucleus | 22.42 | 14.1 |
| CDY21216 | Canola | nucleus | 17.4 | 13.72 |
| CDX87118 | Canola | nucleus | 25.66 | 10.46 |
| CDX69392 | Canola | nucleus | 8.55 | 6.78 |
| CDX86969 | Canola | cytosol | 0.59 | 1.87 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:A0A078G4K1 | UniProt:A0A078G4K1 | EnsemblPlants:CDY20351 | ProteinID:CDY20351 |
| ProteinID:CDY20351.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| EnsemblPlantsGene:GSBRNA2T00012336001 | InterPro:IPR003441 | InterPro:IPR036093 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 |
| PFscan:PS51005 | PANTHER:PTHR31989 | PANTHER:PTHR31989:SF40 | SUPFAM:SSF101941 | TMHMM:TMhelix | UniParc:UPI0004EC99E8 |
| SEG:seg | : | : | : | : | : |
Description
BnaC01g23890DBnaC01g23890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G4K1]
Coordinates
chrLK032106:-:477942..479558
Molecular Weight (calculated)
38379.9 Da
IEP (calculated)
5.496
GRAVY (calculated)
-0.313
Length
339 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEVSRDTSV SVAVSTAFPG FKFSPTDIEL ISYYLKRKMD GLERSVEIIP ELDIYNFEPW DLPDKSIVKS DSEWFFFCAR GKKYPHGSQN RRATKMGYWK
101: ATGKERNVKS GSEVIGTKRT LVFHIGRAPK GGRTEWIMHE YCMIGVSLDG LVICRLRRNI EFQGATTQKP PPQPSLSLDK KRNLQNETVS ESISGWENMV
201: DYYLSGESGH ELLCEIAESS QSSHNPQVRS EEDFYADILL DDIVKLDDPA DSGNTLIDVP RLQSESTTTR VLPLPSMVDK QMQSLLQKLP LQNDIGEENN
301: ISMSSCFIGI YSIKSINRAR WDVVAWVLVM IAVLVFYLV
101: ATGKERNVKS GSEVIGTKRT LVFHIGRAPK GGRTEWIMHE YCMIGVSLDG LVICRLRRNI EFQGATTQKP PPQPSLSLDK KRNLQNETVS ESISGWENMV
201: DYYLSGESGH ELLCEIAESS QSSHNPQVRS EEDFYADILL DDIVKLDDPA DSGNTLIDVP RLQSESTTTR VLPLPSMVDK QMQSLLQKLP LQNDIGEENN
301: ISMSSCFIGI YSIKSINRAR WDVVAWVLVM IAVLVFYLV
001: MAAAPPIEPA VTTTFPGFKF SPTDIELISY YLKRKMDGLE RSVEIIPEVE IYNFEPWDLP DKSIVKSDSE WFFFCARGKK YPHGSQNRRA TKIGYWKATG
101: KERNVKSGSE VIGTKRTLVF HIGRAPKGGR TEWLMHEYCM IGVSLDALVI CRLRRNTEFQ GSTIQKPPQP SLPLDKHVNL RNEAISESIY GWETMVDFYL
201: SSESGQELLS EIAESSQSSQ NPQVPSEEDF YADILRDEIV KLDDPAVSGN TLINVPRLQT ESNTTRVLPL PDMVDKQMQS LLQKLPLQND TGEENNISMS
301: NCFIGIYSIK SINRARWDVV VWLLVMIAVL VFYLV
101: KERNVKSGSE VIGTKRTLVF HIGRAPKGGR TEWLMHEYCM IGVSLDALVI CRLRRNTEFQ GSTIQKPPQP SLPLDKHVNL RNEAISESIY GWETMVDFYL
201: SSESGQELLS EIAESSQSSQ NPQVPSEEDF YADILRDEIV KLDDPAVSGN TLINVPRLQT ESNTTRVLPL PDMVDKQMQS LLQKLPLQND TGEENNISMS
301: NCFIGIYSIK SINRARWDVV VWLLVMIAVL VFYLV
Arabidopsis Description
NAC60NAC domain-containing protein 60 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXL9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.