Subcellular Localization
min:
: max
Winner_takes_all: golgi, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- golgi 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012024.1-P | Field mustard | cytosol, golgi, nucleus | 97.1 | 97.1 |
| CDY04487 | Canola | cytosol | 97.1 | 97.1 |
| AT2G27300.1 | Thale cress | nucleus | 81.45 | 83.88 |
| CDY70627 | Canola | cytosol | 22.61 | 47.27 |
| CDY41351 | Canola | plastid | 20.87 | 43.11 |
| CDY34714 | Canola | cytosol, golgi, nucleus | 41.74 | 42.6 |
| CDY20351 | Canola | cytosol, golgi, nucleus | 41.16 | 41.89 |
| CDY09128 | Canola | cytosol | 40.87 | 41.11 |
| CDY35676 | Canola | cytoskeleton, cytosol, nucleus | 40.29 | 40.52 |
| CDY71253 | Canola | cytosol | 20.87 | 40.45 |
| CDX92368 | Canola | cytosol | 38.84 | 40.0 |
| CDX70995 | Canola | cytosol | 38.55 | 39.82 |
| CDX88803 | Canola | cytosol | 37.68 | 38.58 |
| CDY34716 | Canola | nucleus | 32.46 | 38.1 |
| CDX92153 | Canola | nucleus | 22.61 | 34.51 |
| CDX95832 | Canola | nucleus | 22.61 | 34.51 |
| CDX90431 | Canola | nucleus | 24.64 | 29.72 |
| CDY01508 | Canola | nucleus | 24.06 | 29.02 |
| CDY67205 | Canola | nucleus | 24.06 | 29.02 |
| CDY66060 | Canola | nucleus | 24.06 | 29.02 |
| CDX84070 | Canola | nucleus | 23.77 | 28.98 |
| CDX77674 | Canola | nucleus | 23.48 | 28.52 |
| CDY63046 | Canola | nucleus | 23.48 | 27.93 |
| CDY44498 | Canola | nucleus | 23.48 | 27.74 |
| CDX78816 | Canola | nucleus | 23.48 | 27.74 |
| CDX86970 | Canola | nucleus | 24.93 | 27.22 |
| CDY59580 | Canola | nucleus | 23.19 | 27.21 |
| CDX87703 | Canola | nucleus | 22.9 | 26.87 |
| CDY10502 | Canola | nucleus | 23.48 | 26.38 |
| CDY42413 | Canola | nucleus | 23.19 | 25.89 |
| CDX67739 | Canola | nucleus | 22.61 | 25.08 |
| CDX81124 | Canola | nucleus | 24.64 | 24.85 |
| CDY46459 | Canola | nucleus | 21.74 | 24.67 |
| CDY43785 | Canola | nucleus | 24.35 | 24.42 |
| CDX84485 | Canola | nucleus | 24.35 | 24.28 |
| CDY44793 | Canola | nucleus | 24.06 | 23.71 |
| CDY05939 | Canola | nucleus | 29.57 | 22.03 |
| CDX88115 | Canola | cytosol | 27.83 | 21.67 |
| CDY08139 | Canola | nucleus | 28.99 | 21.55 |
| CDY19828 | Canola | nucleus | 27.25 | 21.12 |
| CDY00208 | Canola | nucleus | 26.38 | 21.06 |
| CDX80455 | Canola | nucleus | 27.83 | 21.05 |
| CDY00676 | Canola | nucleus | 25.8 | 20.79 |
| CDY41352 | Canola | nucleus | 25.22 | 20.67 |
| CDX69911 | Canola | nucleus | 24.93 | 19.63 |
| CDY21575 | Canola | nucleus | 24.64 | 19.59 |
| CDY41353 | Canola | nucleus | 24.93 | 19.5 |
| CDY43143 | Canola | nucleus | 26.96 | 19.46 |
| CDY28745 | Canola | cytosol | 26.67 | 19.25 |
| CDY49932 | Canola | nucleus | 26.67 | 19.21 |
| CDY00677 | Canola | nucleus | 24.64 | 19.1 |
| CDX70745 | Canola | cytosol | 27.25 | 19.03 |
| CDX73920 | Canola | nucleus | 24.64 | 19.02 |
| CDX78356 | Canola | nucleus | 20.0 | 19.01 |
| CDX78734 | Canola | cytosol | 26.96 | 18.98 |
| CDY16943 | Canola | nucleus | 27.25 | 18.91 |
| CDX73921 | Canola | cytosol, nucleus, plastid | 24.93 | 18.86 |
| CDY00946 | Canola | nucleus | 24.35 | 18.63 |
| CDY08601 | Canola | nucleus, plastid | 24.35 | 18.46 |
| CDY41354 | Canola | cytosol, nucleus, plastid | 27.25 | 17.5 |
| CDY14157 | Canola | cytosol, nucleus, vacuole | 25.51 | 17.05 |
| CDY25752 | Canola | nucleus | 24.93 | 16.9 |
| CDX70227 | Canola | cytosol, nucleus, vacuole | 26.96 | 16.79 |
| CDY61762 | Canola | cytosol, nucleus, plastid | 24.93 | 16.57 |
| CDY44853 | Canola | cytosol, nucleus, vacuole | 26.38 | 16.25 |
| CDX73305 | Canola | nucleus | 24.35 | 16.12 |
| CDY60870 | Canola | nucleus | 26.96 | 16.12 |
| CDY12515 | Canola | plastid | 25.22 | 15.96 |
| CDY28401 | Canola | cytosol, nucleus, plastid | 25.22 | 15.93 |
| CDY58437 | Canola | cytosol, nucleus, plastid | 25.51 | 15.83 |
| CDY11289 | Canola | cytosol, nucleus, vacuole | 25.8 | 15.72 |
| CDX93723 | Canola | nucleus | 25.22 | 15.65 |
| CDY16427 | Canola | nucleus | 26.96 | 15.63 |
| CDY48632 | Canola | cytosol, nucleus, plastid | 25.22 | 15.45 |
| CDY26922 | Canola | nucleus | 28.12 | 15.25 |
| CDY66161 | Canola | nucleus | 27.83 | 15.12 |
| CDY70628 | Canola | golgi | 17.1 | 14.9 |
| CDX91785 | Canola | nucleus | 22.9 | 14.66 |
| CDY28397 | Canola | nucleus | 24.35 | 14.53 |
| CDX73304 | Canola | nucleus | 24.35 | 14.41 |
| CDY21216 | Canola | nucleus | 17.39 | 13.95 |
| CDX87118 | Canola | nucleus | 27.54 | 11.42 |
| CDX69392 | Canola | nucleus | 10.43 | 8.41 |
| CDX86969 | Canola | cytosol | 1.16 | 3.74 |
Protein Annotations
| MapMan:15.5.17 | Gene3D:3.30.310.150 | GO:A0A078C5L8 | EnsemblPlants:CDX71459 | ProteinID:CDX71459 | ProteinID:CDX71459.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00148321001 |
| InterPro:IPR003441 | InterPro:IPR036093 | InterPro:NAC-dom | InterPro:NAC_dom_sf | PFAM:PF02365 | PFscan:PS51005 |
| PANTHER:PTHR31989 | PANTHER:PTHR31989:SF40 | SUPFAM:SSF101941 | TMHMM:TMhelix | UniParc:UPI0004EF3F07 | : |
Description
BnaC04g16940D
Coordinates
chrLK031793:+:1077838..1079117
Molecular Weight (calculated)
39005.8 Da
IEP (calculated)
6.093
GRAVY (calculated)
-0.641
Length
345 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKEAEMSIA VSALFPGFRF SPTDVELISY YLRRKIEGDE NSVAVIAEVE IYKFEPWDLP GESKLKSENE WFYFCARGRK YPHGSQSRRA TELGYWKATG
101: KERSVKSGNQ IVGTKRTLVF HIGRAPRGER TEWIMHEYCI HGASQDALVV CRLRKNADFR ASSSQRQMED GLVQDDDYVG QTGGSEREKK SYLVDEPEQL
201: QISNGDIAES SNVVEYQDDT NDDCYAEILN DDIIKLDEEA VKANQAFRPN YPTQQKAIFT EASSSKQMSE CGTKKESKQT MNSYALFRIK NGSTASSSGC
301: KIPNPLTHIK KDDSQRVTKN VLATTVFLTI LMSVLFTVLT ARDRD
101: KERSVKSGNQ IVGTKRTLVF HIGRAPRGER TEWIMHEYCI HGASQDALVV CRLRKNADFR ASSSQRQMED GLVQDDDYVG QTGGSEREKK SYLVDEPEQL
201: QISNGDIAES SNVVEYQDDT NDDCYAEILN DDIIKLDEEA VKANQAFRPN YPTQQKAIFT EASSSKQMSE CGTKKESKQT MNSYALFRIK NGSTASSSGC
301: KIPNPLTHIK KDDSQRVTKN VLATTVFLTI LMSVLFTVLT ARDRD
001: MSKEAEMSIA VSALFPGFRF SPTDVELISY YLRRKIDGDE NSVAVIAEVE IYKFEPWDLP EESKLKSENE WFYFCARGRK YPHGSQSRRA TQLGYWKATG
101: KERSVKSGNQ VVGTKRTLVF HIGRAPRGER TEWIMHEYCI HGAPQDALVV CRLRKNADFR ASSTQKMEDG VVQDDGYVGQ RGGLEKEDKS YYESEHQIPN
201: GDIAESSNVV EDQADTDDDC YAEILNDDII KLDEEALKAS QAFRPTNPTH QETISSESSS KRSKCGIKKE STETMNCYAL FRIKNVAGTD SSWRFPNPFK
301: IKKDDSQRLM KNVLATTVFL AILFSFFWTV LIARN
101: KERSVKSGNQ VVGTKRTLVF HIGRAPRGER TEWIMHEYCI HGAPQDALVV CRLRKNADFR ASSTQKMEDG VVQDDGYVGQ RGGLEKEDKS YYESEHQIPN
201: GDIAESSNVV EDQADTDDDC YAEILNDDII KLDEEALKAS QAFRPTNPTH QETISSESSS KRSKCGIKKE STETMNCYAL FRIKNVAGTD SSWRFPNPFK
301: IKKDDSQRLM KNVLATTVFL AILFSFFWTV LIARN
Arabidopsis Description
NTL8NAC domain-containing protein 40 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIN7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.