Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G070780.5 | Barley | nucleus | 92.44 | 74.72 |
| CDX86969 | Canola | cytosol | 3.16 | 16.82 |
| CDX86970 | Canola | nucleus | 4.57 | 8.23 |
| HORVU5Hr1G086780.2 | Barley | cytosol, nucleus | 2.11 | 5.41 |
| HORVU4Hr1G085320.1 | Barley | cytosol, nucleus, peroxisome | 5.98 | 4.93 |
| HORVU3Hr1G036380.1 | Barley | cytosol | 3.87 | 4.56 |
| HORVU5Hr1G086730.1 | Barley | nucleus | 2.28 | 4.28 |
| HORVU2Hr1G127510.1 | Barley | nucleus | 2.81 | 3.98 |
| HORVU2Hr1G127550.1 | Barley | nucleus | 2.81 | 3.98 |
| HORVU5Hr1G074230.30 | Barley | nucleus, plastid | 5.27 | 3.96 |
| HORVU1Hr1G049840.3 | Barley | cytosol | 2.46 | 3.92 |
| HORVU6Hr1G093050.4 | Barley | cytosol, golgi, nucleus | 4.04 | 3.59 |
| HORVU7Hr1G060310.1 | Barley | nucleus | 3.87 | 3.41 |
| CDX69392 | Canola | nucleus | 2.28 | 3.04 |
| HORVU1Hr1G065570.2 | Barley | nucleus | 2.28 | 3.02 |
| HORVU2Hr1G045580.1 | Barley | nucleus | 1.41 | 2.29 |
| HORVU7Hr1G033990.1 | Barley | nucleus | 1.41 | 2.29 |
| HORVU0Hr1G000630.1 | Barley | nucleus | 0.88 | 1.88 |
| HORVU5Hr1G087840.5 | Barley | nucleus, plastid | 1.05 | 1.81 |
| HORVU5Hr1G087850.4 | Barley | nucleus | 0.53 | 1.22 |
Protein Annotations
| EnsemblPlants:HORVU0Hr1G021100.1 | EnsemblPlantsGene:HORVU0Hr1G021100 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | ncoils:Coil |
| PANTHER:PTHR31989 | PANTHER:PTHR31989:SF102 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000B4624FA | UniProt:A0A287E6H9 |
| MapMan:35.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchrUn:-:110453749..110456167
Molecular Weight (calculated)
58441.9 Da
IEP (calculated)
4.213
GRAVY (calculated)
-0.586
Length
569 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSLFLESKQ XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXGYSPTP SRSTPDNMEA NEEAITLINK ESPESGLHGC PIELPCTIET LGAPVTRWLA
101: DRNGNPGTDE ANDVGMPFHR GVDESPKQAD LSVGSLAHLI DSQTKNLGSH EFATVSAPML PDDHLDNLLL HLTHNSVEDF LNETIADPDE LSSTACKVQY
201: DSDNGIMQAQ GDLLYDDPNW FGNFLSDDTN PQPSGLYENA PLLPYGTNPD VLSMDSGDES LQDLFNSMDD SSWQNDVWSN GFGFNPMHQQ LQSTVHPNYI
301: FSQQGIARRR LRLLDSLSDV NVESRESMTR DEHEDEESDI VTSKYRSESV ESSADVDESE STGVTIMSRR RALTKSVPSD RDDAESTGIT IMGRRSAPSS
401: NAPSDEADAE ATGINIVSRR TAPSSSTDNS FTTEQGTAVR RLRLQSNLDA GSCSSVDGLS SCIIEHGSEN EGLEAEIDEH VDTNFLDDVG FAGNSHADEH
501: MYMPDHEANS LTRLRKTAEK SDKENKQECG PQSHVRAPRK RGGFAARMIL PVLSVALLVL VSVGVYGWA
101: DRNGNPGTDE ANDVGMPFHR GVDESPKQAD LSVGSLAHLI DSQTKNLGSH EFATVSAPML PDDHLDNLLL HLTHNSVEDF LNETIADPDE LSSTACKVQY
201: DSDNGIMQAQ GDLLYDDPNW FGNFLSDDTN PQPSGLYENA PLLPYGTNPD VLSMDSGDES LQDLFNSMDD SSWQNDVWSN GFGFNPMHQQ LQSTVHPNYI
301: FSQQGIARRR LRLLDSLSDV NVESRESMTR DEHEDEESDI VTSKYRSESV ESSADVDESE STGVTIMSRR RALTKSVPSD RDDAESTGIT IMGRRSAPSS
401: NAPSDEADAE ATGINIVSRR TAPSSSTDNS FTTEQGTAVR RLRLQSNLDA GSCSSVDGLS SCIIEHGSEN EGLEAEIDEH VDTNFLDDVG FAGNSHADEH
501: MYMPDHEANS LTRLRKTAEK SDKENKQECG PQSHVRAPRK RGGFAARMIL PVLSVALLVL VSVGVYGWA
001: MNQNLHVLSM DSLPVGLRFR PTDEELIRYY LRRKINGHDD DVKAIREIDI CKWEPWDLPD FSVIKTKDSE WLYFCPLDRK YPSGSRQNRA TVAGYWKATG
101: KDRKIKSGKT NIIGVKRTLV FHAGRAPRGT RTNWIIHEYR ATEDDLSGTN PGQSPFVICK LFKKEELVLG EEDSKSDEVE EPAVSSPTVE VTKSEVSEVI
201: KTEDVKRHDI AESSLVISGD SHSDACDEAT TAELVDFKWY PELESLDFTL FSPLHSQVQS ELGSSYNTFQ PGSSNFSGNN NNSFQIQTQY GTNEVDTYIS
301: DFLDSILKSP DEDPEKHKYV LQSGFDVVAP DQIAQVCQQG SAVDMSNDVS VTGIQIKSRQ AQPSGYTNDY IAQGNGPRRL RLQSNFNGIN TKNPELQAIK
401: REVRITPTF
101: KDRKIKSGKT NIIGVKRTLV FHAGRAPRGT RTNWIIHEYR ATEDDLSGTN PGQSPFVICK LFKKEELVLG EEDSKSDEVE EPAVSSPTVE VTKSEVSEVI
201: KTEDVKRHDI AESSLVISGD SHSDACDEAT TAELVDFKWY PELESLDFTL FSPLHSQVQS ELGSSYNTFQ PGSSNFSGNN NNSFQIQTQY GTNEVDTYIS
301: DFLDSILKSP DEDPEKHKYV LQSGFDVVAP DQIAQVCQQG SAVDMSNDVS VTGIQIKSRQ AQPSGYTNDY IAQGNGPRRL RLQSNFNGIN TKNPELQAIK
401: REVRITPTF
Arabidopsis Description
NAC062NAC domain-containing protein 62 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCK6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.