CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, plastid

Predictor Summary:

plastid 9
extracellular 1
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH08190
KRH11076
KRH21197
KRH28715
KRH33893
KRH42923
KRH42926
KRH45251
KRH59035
KRH59036
KRH68524
KRH69884
KRH76747

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51010.1	KRH08190	AT3G50910.1	21798944
AT5G51010.1	KRH28715	AT3G50910.1	21798944
AT5G51010.1	KRH69884	AT3G50910.1	21798944
AT5G51010.1	KRH76747	AT3G50910.1	21798944
AT5G51010.1	KRH11076	AT4G19030.1	21798944
AT5G51010.1	KRH21197	AT4G19030.1	21798944
AT5G51010.1	KRH42923	AT4G19030.1	21798944
AT5G51010.1	KRH42926	AT4G19030.1	21798944
AT5G51010.1	KRH45251	AT4G19030.1	21798944
AT5G51010.1	KRH59035	AT4G19030.1	21798944
AT5G51010.1	KRH59036	AT4G19030.1	21798944
AT5G51010.1	KRH33893	AT5G27690.1	21798944
AT5G51010.1	KRH68524	AT5G27690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59722	Soybean	nucleus	87.9	89.61
VIT_17s0000g00110.t01	Wine grape	plastid	69.43	67.28
KRH63883	Soybean	plastid	68.15	64.85
Zm00001d007394_P001	Maize	plastid	57.96	61.9
AT5G51010.1	Thale cress	plastid	59.87	61.04
KRH54078	Soybean	plastid	54.78	59.72
Solyc03g118130.2.1	Tomato	plastid	59.87	59.49
PGSC0003DMT400036930	Potato	plastid	59.87	58.75
EES09846	Sorghum	plastid	56.05	58.28
GSMUA_Achr10P...	Banana	plastid	62.42	57.99
Os11t0528500-01	Rice	plastid	55.41	57.62
CDX84893	Canola	plastid	57.32	57.32
Bra022748.1-P	Field mustard	plastid	57.32	57.32
TraesCS4B01G100700.1	Wheat	plastid	53.5	54.9
TraesCS4D01G097300.1	Wheat	plastid	52.87	54.25
CDY45796	Canola	plastid	54.78	53.09
TraesCS4A01G215500.1	Wheat	plastid	51.59	52.26
HORVU4Hr1G043650.2	Barley	plastid	52.87	32.94
GSMUA_Achr6P16380_001	Banana	vacuole	34.39	30.68

Protein Annotations

EntrezGene:100306219	Gene3D:2.20.28.10	MapMan:35.2	EMBL:ACUP02004747	EMBL:BT090219	UniProt:C6SYH1
EnsemblPlantsGene:GLYMA_08G007200	GO:GO:0003674	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:IPR024934	EnsemblPlants:KRH41049	ProteinID:KRH41049	ProteinID:KRH41049.1	PFAM:PF00301
PFscan:PS50903	PANTHER:PTHR45299	InterPro:Rubredoxin-like_dom	InterPro:Rubredoxin_dom	SUPFAM:SSF57802	TMHMM:TMhelix
UniParc:UPI0001B1585B	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:543920..545721

Molecular Weight (calculated)

17480.1 Da

IEP (calculated)

10.225

GRAVY (calculated)

-0.275

Length

157 amino acids

Sequence
(BLAST)

001: MALQAPPSLH TVNGNAGLRR PLMNPSSFSL KSSFFSGSLN FYLHPNHLHL TSAPPRISMR VASKQAYICR DCGYIYKDRT PFEKLPDNYF CPVCGAPKRR
101: FRPYAPAITK NDNDTAVRKA RKAELQRDEA VGKALPIAIG VGIAVLAGLY FYLNSQY

Best Arabidopsis Sequence Match ( AT5G51010.1 )
(BLAST)

001: MAMQLPPTTL YAGRSSVVLP PTTPTLQRSS FLPYYSMRLL GNKKSLSKSS APRFSMRVSS KQAYICRDCG YIYNDRTPFD KLPDNYFCPV CAAPKRRFRA
101: YMPDVSKNVN DKDVRKARKA ELQRDEAVGK ALPIGIAVGV LALAALYFYV NSTS

Arabidopsis Description

Rubredoxin-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FI47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.