Subcellular Localization
min:
: max
Winner_takes_all: vacuole
Predictor Summary:
Predictor Summary:
- extracellular 2
- golgi 2
- plasma membrane 2
- endoplasmic reticulum 2
- vacuole 3
- cytosol 2
- plastid 2
- nucleus 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | plastid | 37.5 | 39.05 |
| KRH59722 | Soybean | nucleus | 31.82 | 36.36 |
| KRH54078 | Soybean | plastid | 29.55 | 36.11 |
| VIT_17s0000g00110.t01 | Wine grape | plastid | 32.39 | 35.19 |
| EES09846 | Sorghum | plastid | 30.11 | 35.1 |
| KRH41049 | Soybean | nucleus, plastid | 30.68 | 34.39 |
| Zm00001d007394_P001 | Maize | plastid | 28.41 | 34.01 |
| Solyc03g118130.2.1 | Tomato | plastid | 29.55 | 32.91 |
| Os11t0528500-01 | Rice | plastid | 27.84 | 32.45 |
| KRH63883 | Soybean | plastid | 30.11 | 32.12 |
| PGSC0003DMT400036930 | Potato | plastid | 28.98 | 31.88 |
| TraesCS4D01G097300.1 | Wheat | plastid | 27.27 | 31.37 |
| CDX84893 | Canola | plastid | 27.84 | 31.21 |
| Bra022748.1-P | Field mustard | plastid | 27.84 | 31.21 |
| AT5G51010.1 | Thale cress | plastid | 27.27 | 31.17 |
| TraesCS4B01G100700.1 | Wheat | plastid | 26.7 | 30.72 |
| TraesCS4A01G215500.1 | Wheat | plastid | 26.7 | 30.32 |
| CDY45796 | Canola | plastid | 27.27 | 29.63 |
| HORVU4Hr1G043650.2 | Barley | plastid | 27.27 | 19.05 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P16380_001 | EnsemblPlants:GSMUA_Achr6T16380_001 | EnsemblPlantsGene:GSMUA_Achr6G16380_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR45299 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0002954B85 | UniProt:M0T7I6 | MapMan:35.2 |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G16380_001]
Coordinates
chr6:-:10914905..10915813
Molecular Weight (calculated)
18992.0 Da
IEP (calculated)
10.478
GRAVY (calculated)
-0.210
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MHFTIGLRSP HFYYLLSYPL VSYPPSRLRG GPIHPAIQAC AAPPTATPSG QPPSLPPCTS CCRHRADAPP RRRGSPCAWC PSRPTSAATA AISTMTGRHL
101: RSCLISTSVP AICGAPKRRF RPYEPAVAKN SNDTDVRQAR KAQIKRDEAI GRALPVAVVL GVAGLPGLYF YLNNVY
101: RSCLISTSVP AICGAPKRRF RPYEPAVAKN SNDTDVRQAR KAQIKRDEAI GRALPVAVVL GVAGLPGLYF YLNNVY
001: MAMQLPPTTL YAGRSSVVLP PTTPTLQRSS FLPYYSMRLL GNKKSLSKSS APRFSMRVSS KQAYICRDCG YIYNDRTPFD KLPDNYFCPV CAAPKRRFRA
101: YMPDVSKNVN DKDVRKARKA ELQRDEAVGK ALPIGIAVGV LALAALYFYV NSTS
101: YMPDVSKNVN DKDVRKARKA ELQRDEAVGK ALPIGIAVGV LALAALYFYV NSTS
Arabidopsis Description
Rubredoxin-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FI47]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.