Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400035125 | Potato | cytosol | 80.12 | 68.25 |
| PGSC0003DMT400035121 | Potato | nucleus | 64.6 | 67.53 |
| PGSC0003DMT400035028 | Potato | nucleus | 50.31 | 65.85 |
| PGSC0003DMT400035129 | Potato | nucleus | 80.12 | 57.59 |
| Solyc05g005350.1.1 | Tomato | nucleus | 78.26 | 57.53 |
| Solyc05g005360.1.1 | Tomato | nucleus | 78.88 | 56.7 |
| Solyc05g005370.1.1 | Tomato | nucleus | 75.78 | 54.46 |
| PGSC0003DMT400079574 | Potato | cytosol | 44.72 | 53.33 |
| PGSC0003DMT400034611 | Potato | mitochondrion | 33.54 | 45.0 |
| PGSC0003DMT400035193 | Potato | cytosol, extracellular, nucleus | 16.77 | 40.91 |
| PGSC0003DMT400084724 | Potato | endoplasmic reticulum, extracellular | 44.1 | 35.86 |
| PGSC0003DMT400035117 | Potato | nucleus | 36.02 | 32.4 |
| Solyc02g032180.1.1 | Tomato | nucleus | 57.14 | 32.06 |
| VIT_00s0956g00020.t01 | Wine grape | nucleus | 40.99 | 31.28 |
| PGSC0003DMT400058414 | Potato | nucleus | 26.09 | 30.88 |
| PGSC0003DMT400029608 | Potato | nucleus | 26.71 | 30.07 |
| CDY25952 | Canola | nucleus | 37.89 | 29.47 |
| PGSC0003DMT400004366 | Potato | nucleus | 25.47 | 29.29 |
| GSMUA_Achr3P04310_001 | Banana | nucleus | 38.51 | 29.25 |
| PGSC0003DMT400082465 | Potato | nucleus | 23.6 | 28.79 |
| CDY41063 | Canola | nucleus | 37.27 | 28.71 |
| KRH51197 | Soybean | nucleus | 39.13 | 28.25 |
| KRH01950 | Soybean | nucleus | 39.13 | 27.88 |
| Bra017471.1-P | Field mustard | nucleus | 36.02 | 27.75 |
| AT5G47670.3 | Thale cress | nucleus | 39.13 | 26.92 |
| Bra024924.1-P | Field mustard | nucleus | 37.89 | 26.41 |
| CDY17715 | Canola | nucleus | 37.89 | 26.41 |
| PGSC0003DMT400063671 | Potato | nucleus | 22.36 | 26.09 |
| PGSC0003DMT400037958 | Potato | nucleus | 25.47 | 23.03 |
| PGSC0003DMT400057066 | Potato | nucleus | 26.09 | 22.7 |
| PGSC0003DMT400043176 | Potato | nucleus | 27.33 | 22.22 |
| PGSC0003DMT400095009 | Potato | nucleus | 24.22 | 20.42 |
| PGSC0003DMT400057379 | Potato | nucleus | 21.74 | 20.23 |
| PGSC0003DMT400010977 | Potato | nucleus | 24.84 | 19.7 |
| PGSC0003DMT400059368 | Potato | cytosol | 18.63 | 19.35 |
| PGSC0003DMT400010436 | Potato | cytosol, mitochondrion, nucleus | 17.39 | 17.72 |
| PGSC0003DMT400063256 | Potato | cytosol, nucleus, plastid | 16.77 | 16.98 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400035119 | EnsemblPlantsGene:PGSC0003DMG400013503 | Gene3D:1.10.20.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0046982 | InterPro:CBFA_NFYB_domain |
| InterPro:Histone-fold | InterPro:IPR009072 | PANTHER:PTHR11064 | PANTHER:PTHR11064:SF20 | PFAM:PF00808 | PGSC:PGSC0003DMG400013503 |
| PRINTS:PR00615 | SUPFAM:SSF47113 | UniParc:UPI000295FCC4 | UniProt:M1B1U6 | MapMan:15.5.51.2 | : |
Description
Leafy cotyledon 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400013503]
Coordinates
chr5:-:8582170..8582655
Molecular Weight (calculated)
18180.1 Da
IEP (calculated)
4.500
GRAVY (calculated)
-0.622
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MHSTHPPHVK ISDDAKRTMY ECISEFICFV TYEANAHCQR EQRNTITDED VHWVINKFGF DDYIEPLPLY FPRYREDDGG KCGSLIGQSL LKRAMVDTAS
101: SCNITPYHLP PNFPMARQNL LYPPPMGNGD LQGDASNGST SQFVVTSVDS DVESPTEEDK E
101: SCNITPYHLP PNFPMARQNL LYPPPMGNGD LQGDASNGST SQFVVTSVDS DVESPTEEDK E
001: MAEGSMRPPE FNQPNKTSNG GEEECTVREQ DRFMPIANVI RIMRRILPAH AKISDDSKET IQECVSEYIS FITGEANERC QREQRKTITA EDVLWAMSKL
101: GFDDYIEPLT LYLHRYRELE GERGVSCSAG SVSMTNGLVV KRPNGTMTEY GAYGPVPGIH MAQYHYRHQN GFVFSGNEPN SKMSGSSSGA SGARVEVFPT
201: QQHKY
101: GFDDYIEPLT LYLHRYRELE GERGVSCSAG SVSMTNGLVV KRPNGTMTEY GAYGPVPGIH MAQYHYRHQN GFVFSGNEPN SKMSGSSSGA SGARVEVFPT
201: QQHKY
Arabidopsis Description
NFYB6Nuclear transcription factor Y subunit B-6 [Source:UniProtKB/Swiss-Prot;Acc:Q84W66]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.