Factsheet for PGSC0003DMT400037958

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g009010.1.1	Tomato	nucleus	94.38	94.38
PGSC0003DMT400029608	Potato	nucleus	60.11	74.83
KRH71548	Soybean	nucleus	58.99	71.43
KRH31905	Soybean	cytosol, mitochondrion, nucleus	57.3	70.34
PGSC0003DMT400058414	Potato	nucleus	47.75	62.5
PGSC0003DMT400063671	Potato	nucleus	48.31	62.32
GSMUA_Achr5P17480_001	Banana	nucleus	51.69	57.14
GSMUA_Achr11P...	Banana	nucleus	51.69	55.42
GSMUA_Achr8P10020_001	Banana	nucleus	52.25	53.14
PGSC0003DMT400082465	Potato	nucleus	38.2	51.52
Os01t0935200-01	Rice	nucleus	50.0	50.28
Zm00001d011915_P001	Maize	nucleus	47.75	49.71
EES04176	Sorghum	nucleus	50.56	49.45
Zm00001d042196_P001	Maize	nucleus	49.44	49.16
PGSC0003DMT400004366	Potato	nucleus	37.64	47.86
HORVU3Hr1G098500.1	Barley	nucleus	48.88	47.54
TraesCSU01G203900.1	Wheat	nucleus	48.88	47.54
TraesCSU01G051000.1	Wheat	nucleus	48.88	47.54
TraesCSU01G050900.1	Wheat	nucleus	48.88	47.54
TraesCS3D01G450100.1	Wheat	nucleus	48.88	47.28
TraesCS3A01G457100.1	Wheat	nucleus	48.88	45.79
PGSC0003DMT400034611	Potato	mitochondrion	30.34	45.0
PGSC0003DMT400035193	Potato	cytosol, extracellular, nucleus	16.29	43.94
PGSC0003DMT400043176	Potato	nucleus	45.51	40.91
PGSC0003DMT400057066	Potato	nucleus	41.57	40.0
PGSC0003DMT400095009	Potato	nucleus	42.7	39.79
PGSC0003DMT400010977	Potato	nucleus	43.82	38.42
PGSC0003DMT400035117	Potato	nucleus	33.71	33.52
PGSC0003DMT400079574	Potato	cytosol	23.6	31.11
PGSC0003DMT400084724	Potato	endoplasmic reticulum, extracellular	30.34	27.27
PGSC0003DMT400035119	Potato	nucleus	23.03	25.47
PGSC0003DMT400035125	Potato	cytosol	26.97	25.4
PGSC0003DMT400035129	Potato	nucleus	28.65	22.77
PGSC0003DMT400057379	Potato	nucleus	21.91	22.54
PGSC0003DMT400059368	Potato	cytosol	18.54	21.29
PGSC0003DMT400010436	Potato	cytosol, mitochondrion, nucleus	18.54	20.89
PGSC0003DMT400063256	Potato	cytosol, nucleus, plastid	18.54	20.75
PGSC0003DMT400035028	Potato	nucleus	10.67	15.45
PGSC0003DMT400035121	Potato	nucleus	11.8	13.64

Protein Annotations

Gene3D:1.10.20.10	EntrezGene:102582547	MapMan:15.5.51.2	InterPro:CBFA_NFYB_domain	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072	UniProt:M1B658
PFAM:PF00808	EnsemblPlantsGene:PGSC0003DMG400014643	PGSC:PGSC0003DMG400014643	EnsemblPlants:PGSC0003DMT400037958	PRINTS:PR00615	ScanProsite:PS00685
PANTHER:PTHR11064	PANTHER:PTHR11064:SF88	SUPFAM:SSF47113	InterPro:Transcrpt_fac_NFYB/HAP3_CS	UniParc:UPI00029622ED	RefSeq:XP_006355798.1

Description

HAP3 subunit of HAP complex [Source:PGSC_GENE;Acc:PGSC0003DMG400014643]

Coordinates

chr6:+:566877..567899

Molecular Weight (calculated)

20418.0 Da

IEP (calculated)

5.400

GRAVY (calculated)

-0.858

Length

178 amino acids

Sequence
(BLAST)

001: MVDNNINILG SKYDKESSNY NSISEDGLIY KEQDRLLPIA NVGRIMKQIL PPNAKISKEA KETMQECVSE FISFVTGEAS DKCHNEKRKT LNGDDICWAL
101: GSLGFDDYVE PLKRYLHKHR ELEGERINQS KGVGFGNNIE DNQRERDDEL TQRGSTIPFK ITIMDRKGEN NFLPTRPY

Best Arabidopsis Sequence Match ( AT2G47810.1 )
(BLAST)

001: MAGNYHSFQN PIPRYQNYNF GSSSSNHQHE HDGLVVVVED QQQEESMMVK EQDRLLPIAN VGRIMKNILP ANAKVSKEAK ETMQECVSEF ISFVTGEASD
101: KCHKEKRKTV NGDDICWAMA NLGFDDYAAQ LKKYLHRYRV LEGEKPNHHG KGGPKSSPDN

Arabidopsis Description

NFYB5NF-YB5 [Source:UniProtKB/TrEMBL;Acc:A0A178VUG0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.