Factsheet for GSMUA_Achr5P17480_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50875	Soybean	nucleus	54.04	71.9
KRH02238	Soybean	nucleus	53.42	69.92
KRH37126	Soybean	nucleus	50.31	69.23
KRH71548	Soybean	nucleus	59.63	65.31
KRH31905	Soybean	cytosol, mitochondrion, nucleus	58.39	64.83
VIT_05s0020g01350.t01	Wine grape	nucleus	54.66	63.77
KRH12126	Soybean	nucleus	56.52	63.19
PGSC0003DMT400058414	Potato	nucleus	50.93	60.29
Solyc01g067130.2.1	Tomato	plastid	51.55	60.14
GSMUA_Achr11P...	Banana	nucleus	60.25	58.43
VIT_07s0104g01640.t01	Wine grape	nucleus	62.73	57.71
GSMUA_Achr8P10020_001	Banana	nucleus	61.49	56.57
GSMUA_Achr11P...	Banana	nucleus	44.72	54.96
EES04176	Sorghum	nucleus	60.87	53.85
Os01t0935200-01	Rice	nucleus	58.39	53.11
Solyc06g009010.1.1	Tomato	nucleus	58.39	52.81
Zm00001d011915_P001	Maize	nucleus	55.9	52.63
GSMUA_Achr5P28380_001	Banana	nucleus	45.34	52.52
PGSC0003DMT400037958	Potato	nucleus	57.14	51.69
Zm00001d042196_P001	Maize	nucleus	57.14	51.4
TraesCSU01G051000.1	Wheat	nucleus	56.52	49.73
TraesCSU01G203900.1	Wheat	nucleus	56.52	49.73
HORVU3Hr1G098500.1	Barley	nucleus	56.52	49.73
TraesCSU01G050900.1	Wheat	nucleus	56.52	49.73
TraesCS3D01G450100.1	Wheat	nucleus	56.52	49.46
TraesCS3A01G457100.1	Wheat	nucleus	56.52	47.89
GSMUA_Achr8P21910_001	Banana	cytosol	34.78	47.46
GSMUA_Achr2P13670_001	Banana	nucleus	45.96	44.31
GSMUA_Achr6P02820_001	Banana	nucleus	45.96	43.79
GSMUA_Achr8P28050_001	Banana	nucleus	40.99	42.04
GSMUA_Achr8P17450_001	Banana	nucleus	45.34	37.63
GSMUA_Achr4P27850_001	Banana	nucleus	44.72	37.31
GSMUA_Achr6P35500_001	Banana	nucleus	31.68	35.92
GSMUA_AchrUn_...	Banana	nucleus	44.72	35.82
GSMUA_Achr8P05300_001	Banana	nucleus	31.06	32.68
GSMUA_Achr9P09260_001	Banana	nucleus	31.06	28.57
GSMUA_Achr1P20700_001	Banana	cytosol	9.32	28.3
GSMUA_Achr3P04310_001	Banana	nucleus	37.27	28.3
GSMUA_Achr9P00790_001	Banana	cytosol, nucleus, peroxisome	21.12	19.65
GSMUA_Achr1P20710_001	Banana	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	11.8	16.1

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.5.51.2	InterPro:CBFA_NFYB_domain	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0046982	EnsemblPlantsGene:GSMUA_Achr5G17480_001
EnsemblPlants:GSMUA_Achr5P17480_001	EnsemblPlants:GSMUA_Achr5T17480_001	InterPro:Histone-fold	InterPro:IPR009072	UniProt:M0SZC7	PFAM:PF00808
PRINTS:PR00615	PANTHER:PTHR11064	PANTHER:PTHR11064:SF88	SUPFAM:SSF47113	UniParc:UPI000294DBE4	SEG:seg

Description

Nuclear transcription factor Y subunit B-5 [Source:GMGC_GENE;Acc:GSMUA_Achr5G17480_001]

Coordinates

chr5:+:17792730..17793215

Molecular Weight (calculated)

17666.4 Da

IEP (calculated)

5.318

GRAVY (calculated)

-0.907

Length

161 amino acids

Sequence
(BLAST)

001: MADSSGNSQE AQGQALGTST GAGSGDGGIK EQDRLLPIAN VGRIMKQMLP PNAKISKEAK ETMQECVSEF ISFVTAEASD RCHKEKRKTV NGDDICWALG
101: TLGFDDYAEP MRRYLHKYRE VEGDRSASNG QNTRSSNFGT GDGQTLFDDM DRNNPSTSRR Y

Best Arabidopsis Sequence Match ( AT2G47810.1 )
(BLAST)

001: MAGNYHSFQN PIPRYQNYNF GSSSSNHQHE HDGLVVVVED QQQEESMMVK EQDRLLPIAN VGRIMKNILP ANAKVSKEAK ETMQECVSEF ISFVTGEASD
101: KCHKEKRKTV NGDDICWAMA NLGFDDYAAQ LKKYLHRYRV LEGEKPNHHG KGGPKSSPDN

Arabidopsis Description

NFYB5NF-YB5 [Source:UniProtKB/TrEMBL;Acc:A0A178VUG0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.