Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 7
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc06g009750.2.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G19895.1 | Solyc06g009750.2.1 | AT4G02150.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400082437 | Potato | plastid | 97.86 | 98.39 |
| VIT_01s0010g01230.t01 | Wine grape | plastid | 70.64 | 67.17 |
| GSMUA_Achr4P11720_001 | Banana | cytosol | 20.46 | 64.97 |
| CDY42216 | Canola | cytosol, mitochondrion, plastid | 57.65 | 64.8 |
| KRH29221 | Soybean | nucleus | 66.19 | 63.59 |
| KRH24219 | Soybean | nucleus | 66.37 | 63.54 |
| AT3G19895.1 | Thale cress | plastid | 60.14 | 61.01 |
| Bra038238.1-P | Field mustard | plastid | 58.36 | 59.42 |
| CDY33428 | Canola | plastid | 58.01 | 59.27 |
| GSMUA_Achr4P11710_001 | Banana | plastid | 40.21 | 57.22 |
| TraesCS6A01G415200.1 | Wheat | cytosol, nucleus, plastid | 50.71 | 56.89 |
| TraesCS7B01G331900.1 | Wheat | cytosol | 31.49 | 56.55 |
| TraesCS6D01G400800.1 | Wheat | cytosol, nucleus, plastid | 50.18 | 56.29 |
| EES07813 | Sorghum | plastid | 49.47 | 56.05 |
| Os02t0829600-01 | Rice | plastid | 51.07 | 54.98 |
| HORVU6Hr1G094240.3 | Barley | nucleus, plastid | 50.71 | 53.67 |
| Zm00001d018533_P003 | Maize | plastid | 49.82 | 53.54 |
| Solyc07g066450.2.1 | Tomato | nucleus | 22.78 | 25.81 |
| Solyc05g052220.2.1 | Tomato | nucleus | 18.68 | 25.18 |
Protein Annotations
| EnsemblPlants:Solyc04g009340.2.1 | EnsemblPlantsGene:Solyc04g009340.2 | Gene3D:2.60.120.330 | Gene3D:3.30.40.10 | InterPro:IPNS-like | InterPro:IPR013083 |
| InterPro:IPR027443 | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR33644 | PANTHER:PTHR33644:SF1 | SEG:seg | SUPFAM:SSF51197 |
| SUPFAM:SSF57850 | UniParc:UPI00027657E5 | UniProt:K4BP90 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr4:-:2776459..2785611
Molecular Weight (calculated)
60332.0 Da
IEP (calculated)
8.142
GRAVY (calculated)
-0.235
Length
562 amino acids
Sequence
(BLAST)
(BLAST)
001: MVMVMMHQHQ HHHSTAPSTH PINPPPPSSA SVLRSPNTPT SNTQQFPSIG SPSVEHGLPL ARVKLSDIVP YDGAPVGPYL RAVEALSGSL MRHNAAVIEL
101: GGEGTAVLRC GLESARYFFK TRAVAQNGGG GAGGAALGKS GRGVYIYRAG RPLEDMDSSP PCMTEVFRCM GRAARAALCA IARHLRLRSD VFNNLLDDNP
201: LPVNEASSSV VVATFSNTTS QNGKGAIGGG KLVTNGEVEK GLLTLVSSDA PGLQVCDPNG HWYLADSGLT PGDLLLLTGK ALSHATAGLR PAAVYRGSAD
301: NYVGTTCGGR TSLAFRLIPQ SNAILDCSPI TAAGHVIPHS YVPISVSQFM DDLSAEEDML CSNTDNAYVA RDNVNKEPSL RSVLSDPLSG AFLEDAMFVS
401: CGHSFGGLML KRVIDMARCI LCNAEIERGS LIPNHVLRTA AAAVKHEDDR RLFHNAALRK RRKEVGDIRE NGELPSENGP HKGVQYPFSV NEKVLIKGNR
501: RTPDKFVGKE AVITSQCLNG WYLLKIMDSG ENVRLQYRSL RKFLPTQETE ERCQSQTVQN SS
101: GGEGTAVLRC GLESARYFFK TRAVAQNGGG GAGGAALGKS GRGVYIYRAG RPLEDMDSSP PCMTEVFRCM GRAARAALCA IARHLRLRSD VFNNLLDDNP
201: LPVNEASSSV VVATFSNTTS QNGKGAIGGG KLVTNGEVEK GLLTLVSSDA PGLQVCDPNG HWYLADSGLT PGDLLLLTGK ALSHATAGLR PAAVYRGSAD
301: NYVGTTCGGR TSLAFRLIPQ SNAILDCSPI TAAGHVIPHS YVPISVSQFM DDLSAEEDML CSNTDNAYVA RDNVNKEPSL RSVLSDPLSG AFLEDAMFVS
401: CGHSFGGLML KRVIDMARCI LCNAEIERGS LIPNHVLRTA AAAVKHEDDR RLFHNAALRK RRKEVGDIRE NGELPSENGP HKGVQYPFSV NEKVLIKGNR
501: RTPDKFVGKE AVITSQCLNG WYLLKIMDSG ENVRLQYRSL RKFLPTQETE ERCQSQTVQN SS
001: MHRQGSSPIT PSNYNAAVSI ASDVPTGLTK SPLSHAIPVS PISAAYPSGD PILMMSGTPL ARVRLSEILP YEGAPSPVYA KAVEALSVSL MRYNASVIEI
101: GSEDTALMRC GLEAARLYFR TRSLTVSGKG NRGLSMYRAG RSVEDLDSSP PCMAEIFRCL GKVARAALSA IARHLRLRSD VFNHMLDDFP LAPNEVSSSV
201: LLASYAHASI QNGKHASGGG NLSAKIEVEK GLLTLFCSDG TGIQVCDPNG RWYTADNGCG VGDLLLITGK ALSHATAGLR PAASYRTTTD HLSATDTRGR
301: ASLAFRLMPK SNAILDCSPI EAAGHVIPQS YVPVSVSQFM DNLLAENDTL VNPPVKTNVP RDDVCKEPSL RSVLSDPISG AFLEDAMVVS CGHSFGGLML
401: RRVLEMSRCT LCNTEIESGS LVPNHALRAA ASAIKQQDDK RLFHNAAMRR RRKEMSDQMD VENGDPATDD GMHRVVHYPF AVNEKVLIKG NRRTPEKFVG
501: KEAIVTSQCL NGWYLLKIVE SGDNVRLQYR SLKKMVNDDR GGGLQAQPVE SNSL
101: GSEDTALMRC GLEAARLYFR TRSLTVSGKG NRGLSMYRAG RSVEDLDSSP PCMAEIFRCL GKVARAALSA IARHLRLRSD VFNHMLDDFP LAPNEVSSSV
201: LLASYAHASI QNGKHASGGG NLSAKIEVEK GLLTLFCSDG TGIQVCDPNG RWYTADNGCG VGDLLLITGK ALSHATAGLR PAASYRTTTD HLSATDTRGR
301: ASLAFRLMPK SNAILDCSPI EAAGHVIPQS YVPVSVSQFM DNLLAENDTL VNPPVKTNVP RDDVCKEPSL RSVLSDPISG AFLEDAMVVS CGHSFGGLML
401: RRVLEMSRCT LCNTEIESGS LVPNHALRAA ASAIKQQDDK RLFHNAAMRR RRKEMSDQMD VENGDPATDD GMHRVVHYPF AVNEKVLIKG NRRTPEKFVG
501: KEAIVTSQCL NGWYLLKIVE SGDNVRLQYR SLKKMVNDDR GGGLQAQPVE SNSL
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GWB1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.