Factsheet for Solyc05g052220.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400030432	Potato	nucleus	83.69	82.51
CDX95798	Canola	extracellular	13.67	50.44
VIT_13s0067g03030.t01	Wine grape	nucleus	50.6	47.85
KRH64207	Soybean	nucleus	46.52	45.54
KRH53725	Soybean	nucleus	46.04	44.86
Bra009097.1-P	Field mustard	nucleus	35.49	41.11
CDX70167	Canola	nucleus	35.49	41.11
TraesCS5A01G469100.2	Wheat	nucleus	33.81	40.87
CDX98826	Canola	nucleus	35.49	40.55
TraesCS5B01G481600.1	Wheat	nucleus	32.85	40.18
TraesCS5D01G481900.1	Wheat	nucleus	33.09	40.12
AT5G05230.1	Thale cress	nucleus	34.77	39.94
EER90651	Sorghum	nucleus, plastid	32.13	39.41
Zm00001d034607_P001	Maize	plastid	32.13	38.73
HORVU5Hr1G111680.4	Barley	plastid	34.05	37.57
GSMUA_Achr1P17210_001	Banana	nucleus	35.49	35.84
Os03t0816000-01	Rice	plastid	12.47	24.64
Solyc04g009340.2.1	Tomato	nucleus	25.18	18.68
Solyc07g066450.2.1	Tomato	nucleus	10.31	8.67

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
InterPro:IPR003613	InterPro:IPR013083	UniProt:K4C1Q3	PFAM:PF04564	PFscan:PS51698	PANTHER:PTHR33644
PANTHER:PTHR33644:SF3	SUPFAM:SSF57850	EnsemblPlantsGene:Solyc05g052220.2	EnsemblPlants:Solyc05g052220.2.1	UniParc:UPI0002765B17	InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5:+:62498939..62507431

Molecular Weight (calculated)

45600.4 Da

IEP (calculated)

4.731

GRAVY (calculated)

-0.760

Length

417 amino acids

Sequence
(BLAST)

001: MASEEMGLVS ARRVENGLNS QLVFHESNFS CGAPPPAQPP GGVGSVTGDP GPKTTRELTG FNHQHQYFLN QHQPQAADFR RQMFGDDRGD GDWNRKSHGD
101: GDGDGSEDED MDDDDDDDDD ENEVEGIVTV ENSDHQNNNS DKVNSNSSGK VVGSDKTRSV STFGVKEGNV GPSGNEGGVD VRNAVIIASV DGDMYYNQYL
201: QGPEGSNAAQ KEMGFENGCG FSGRKEAHYS NESGESLRTI LSDPITGELM DDAMILPCGH SFGSGGVQHV IRMKVCYICS QAVSEDSLSP NLSLRSAIQA
301: FRREEESHLN RSLKRRKERY DQDRGTFGDS ALPDHLRGRG VQFPFAVTDR VIIKGNKRTP ERFVGREAVV TTQCLNGWYV VKTLDNAESV KLQYRSLAKV
401: PENLSIQPIS SKVAAWL

Best Arabidopsis Sequence Match ( AT5G05230.1 )
(BLAST)

001: MSGKGLSPAP FNAQPMIVQD ADPLRFRVGE QDPKTREFAA FIGDHRYFAA AAAAAAAANP HPHLEFRQNF YSEKPIIGNP NDSGGSDGED DVDVEEEDED
101: DDLDGNEGDI GMNKDAGEDS VSAGAVIVVG QDNAAYYSQH FKTVEASFVS RNEESSIAAD NGCDFSGRRD LSSSSSNSIE SLRTILSDPT TGSLMADAMI
201: LPCGHTFGAG GIEQVKQMKA CCTCSQPVSE DSITPNLTLR VAVQAFCREE NSQSNHPSKR KREGFDQERR AFGVTNHSGR SRNKSNHFPF AVADRVIIKG
301: NKRTPPRFVG REAVVTTQCL NGWYVVKTLD NAESVKLQYR SLAKAPEDPS AKATPNKMVS NWL

Arabidopsis Description

PUB62U-box domain-containing protein 62 [Source:UniProtKB/Swiss-Prot;Acc:Q6DBN5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.