Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70167 | Canola | nucleus | 99.44 | 99.44 |
| AT5G05230.1 | Thale cress | nucleus | 75.56 | 74.93 |
| Bra000197.1-P | Field mustard | nucleus | 36.11 | 38.01 |
| KRH64207 | Soybean | nucleus | 43.89 | 37.09 |
| KRH53725 | Soybean | nucleus | 43.33 | 36.45 |
| Solyc05g052220.2.1 | Tomato | nucleus | 41.11 | 35.49 |
| VIT_13s0067g03030.t01 | Wine grape | nucleus | 43.33 | 35.37 |
| PGSC0003DMT400030432 | Potato | nucleus | 41.11 | 34.99 |
| Bra038238.1-P | Field mustard | plastid | 26.11 | 17.03 |
| Bra034715.1-P | Field mustard | nucleus | 10.28 | 7.97 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.1 | EnsemblPlantsGene:Bra009097 | EnsemblPlants:Bra009097.1 | EnsemblPlants:Bra009097.1-P | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004842 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016567 | GO:GO:0016740 | GO:GO:0019538 | InterPro:IPR003613 | InterPro:IPR013083 | UniProt:M4CY00 |
| PFAM:PF04564 | PFscan:PS51698 | PANTHER:PTHR33644 | PANTHER:PTHR33644:SF3 | SUPFAM:SSF57850 | UniParc:UPI0002544A79 |
| InterPro:Ubox_domain | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
AT5G05230 (E=2e-140) | ubiquitin-protein ligase
Coordinates
chrA10:+:15238108..15239787
Molecular Weight (calculated)
39129.9 Da
IEP (calculated)
4.719
GRAVY (calculated)
-0.670
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGKGLSPAS FSAPPMTVQD ADPLRFRVGE QDPKTREFAA FIGDQHRYFA AAAAAAAANP LPHPHLEFRQ SFYSESGNPN DSGGSDGEEE VEEEDEEDDD
101: VDGNEGDGMN KDVGEDGGAV VGIEQDNAAY YSQQFKAMEA SFVSRHEESS SVAAENGCDV SGRRDASSSS LSNSIESLRT ILSDPLTGAL MSDAMILPCG
201: HTFGAGGIEQ VKQMKACCTC SQPVSEDSIT PNLTLRVAVQ AFCREEKSQS NHSSKRKREG FDQERRSFGD TAYTNRSRNR TNHFPFAVAD RVIIKGNKRT
301: PPRFVGREAV VTTQCLNGWY VVKTLDNAES VKLQYRSLAK ATEDDPSTKA TPSKLVSNWL
101: VDGNEGDGMN KDVGEDGGAV VGIEQDNAAY YSQQFKAMEA SFVSRHEESS SVAAENGCDV SGRRDASSSS LSNSIESLRT ILSDPLTGAL MSDAMILPCG
201: HTFGAGGIEQ VKQMKACCTC SQPVSEDSIT PNLTLRVAVQ AFCREEKSQS NHSSKRKREG FDQERRSFGD TAYTNRSRNR TNHFPFAVAD RVIIKGNKRT
301: PPRFVGREAV VTTQCLNGWY VVKTLDNAES VKLQYRSLAK ATEDDPSTKA TPSKLVSNWL
001: MSGKGLSPAP FNAQPMIVQD ADPLRFRVGE QDPKTREFAA FIGDHRYFAA AAAAAAAANP HPHLEFRQNF YSEKPIIGNP NDSGGSDGED DVDVEEEDED
101: DDLDGNEGDI GMNKDAGEDS VSAGAVIVVG QDNAAYYSQH FKTVEASFVS RNEESSIAAD NGCDFSGRRD LSSSSSNSIE SLRTILSDPT TGSLMADAMI
201: LPCGHTFGAG GIEQVKQMKA CCTCSQPVSE DSITPNLTLR VAVQAFCREE NSQSNHPSKR KREGFDQERR AFGVTNHSGR SRNKSNHFPF AVADRVIIKG
301: NKRTPPRFVG REAVVTTQCL NGWYVVKTLD NAESVKLQYR SLAKAPEDPS AKATPNKMVS NWL
101: DDLDGNEGDI GMNKDAGEDS VSAGAVIVVG QDNAAYYSQH FKTVEASFVS RNEESSIAAD NGCDFSGRRD LSSSSSNSIE SLRTILSDPT TGSLMADAMI
201: LPCGHTFGAG GIEQVKQMKA CCTCSQPVSE DSITPNLTLR VAVQAFCREE NSQSNHPSKR KREGFDQERR AFGVTNHSGR SRNKSNHFPF AVADRVIIKG
301: NKRTPPRFVG REAVVTTQCL NGWYVVKTLD NAESVKLQYR SLAKAPEDPS AKATPNKMVS NWL
Arabidopsis Description
PUB62U-box domain-containing protein 62 [Source:UniProtKB/Swiss-Prot;Acc:Q6DBN5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.