Factsheet for Bra000197.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22467	Canola	mitochondrion	70.18	61.38
AT2G40640.1	Thale cress	mitochondrion	53.8	48.04
Bra009097.1-P	Field mustard	nucleus	38.01	36.11
TraesCS5D01G481900.1	Wheat	nucleus	33.04	32.85
TraesCS5B01G481600.1	Wheat	nucleus	32.75	32.84
TraesCS5A01G469100.2	Wheat	nucleus	33.04	32.75
EER90651	Sorghum	nucleus, plastid	31.58	31.76
Zm00001d034607_P001	Maize	plastid	30.99	30.64
HORVU5Hr1G111680.4	Barley	plastid	32.75	29.63
GSMUA_Achr1P17210_001	Banana	nucleus	34.5	28.57
Os03t0816000-01	Rice	plastid	11.7	18.96
Bra038238.1-P	Field mustard	plastid	26.9	16.67
Bra034715.1-P	Field mustard	nucleus	10.53	7.76

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	EnsemblPlantsGene:Bra000197	EnsemblPlants:Bra000197.1	EnsemblPlants:Bra000197.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0004842	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	InterPro:IPR003613	InterPro:IPR013083	UniProt:M4C7L9
PFscan:PS51698	PANTHER:PTHR33644	PANTHER:PTHR33644:SF3	SUPFAM:SSF57850	UniParc:UPI00025402DB	InterPro:Ubox_domain
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

AT2G40640 (E=3e-126) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: ubiquitin-protein ligase (TAIR:AT5G05230.1); Has 41 Blast hits to 41 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

Coordinates

chrA03:-:9823999..9825641

Molecular Weight (calculated)

38057.7 Da

IEP (calculated)

6.770

GRAVY (calculated)

-0.660

Length

342 amino acids

Sequence
(BLAST)

001: MSVNDGLDPR FLYHVEDESL RFRVGESGPK SRELDHRRFE SSGFRQGFCG NEKEEMRYSN GDEDVCIRRG SSLVQPGIDS CSSIPAETNR GSKDLGSAGW
101: ELVVREEEEE EDKASLDCRK VMMSNDSSSQ CNTQAKRDFA SVEKERGTSV SSWESLKSIL SDPVTGVLMS DATILPCGHS FGAGGLKEVK RMKACFTCSQ
201: PTSEGSEKPN LSLRIVVHAF RQEEESDHVH SLKRRKERSD QHKRTFCIPN ITDTPKSSSR GIQCPFSIGD RIIIEGNKRT PPRFVGRKAV IMTHCLNGWY
301: VVKTVDNAES IKLQHCSLAK IPDNSPSEVT VAEMAPSWLS SS

Best Arabidopsis Sequence Match ( AT2G40640.1 )
(BLAST)

001: MSHLRRRRFK LSLCALPVSI DRLLNFPAEK QMSVNDSIDP RFVFHVEDES LRFRVGDSGT KIRELETVGD RHFRTQQGFC GNRIEKDETM YSDGDDEEYD
101: VSIRRRTALI QPGIDSGNNY DSAAAEETNR ESKNPVGWEL VVREDGEGNS TIDRHEMEFK VRITKPDGNV SNSHRNTQQK RDFASVEKER VTTTSVSSWE
201: SLKAILSDPV TGALMNDATI LPCGHSFGAG GLKEVKKMKA CFTCSQPTLE GSEKPNLSLR IVVHAFRQEE DSDHIHTLKR RKERSDQKRS FCIPNITETP
301: KSSRGIQFPF SIGDHIIIEG NKRTPPRFVG RIAVIMTQCL NGWYVVKTVD NSESIKLQHC SLAKISDNSS TKVTVAEMPP SWL

Arabidopsis Description

PUB63U-box domain-containing protein 63 [Source:UniProtKB/Swiss-Prot;Acc:Q58FY4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.