CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
mitochondrion 6
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000197.1-P	Field mustard	nucleus	61.38	70.18
AT2G40640.1	Thale cress	mitochondrion	45.27	46.21
CDX95798	Canola	extracellular	11.51	39.82
CDX70167	Canola	nucleus	31.97	34.72
CDX98826	Canola	nucleus	31.71	33.97
TraesCS5A01G469100.2	Wheat	nucleus	28.13	31.88
TraesCS5D01G481900.1	Wheat	nucleus	27.11	30.81
Zm00001d034607_P001	Maize	plastid	26.85	30.35
EER90651	Sorghum	nucleus, plastid	26.34	30.29
TraesCS5B01G481600.1	Wheat	nucleus	26.34	30.21
GSMUA_Achr1P17210_001	Banana	nucleus	30.95	29.3
HORVU5Hr1G111680.4	Barley	plastid	28.13	29.1
CDY69157	Canola	extracellular, golgi, vacuole	18.41	24.08
Os03t0816000-01	Rice	plastid	11.51	21.33
CDY42216	Canola	cytosol, mitochondrion, plastid	23.53	18.4
CDY33428	Canola	plastid	23.79	16.91
CDY23555	Canola	nucleus	11.25	9.46
CDY60118	Canola	nucleus	11.0	9.27

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078GBL8	UniProt:A0A078GBL8	EnsemblPlants:CDY22467	ProteinID:CDY22467
ProteinID:CDY22467.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00019016001
InterPro:IPR003613	InterPro:IPR013083	PFscan:PS51698	PANTHER:PTHR33644	PANTHER:PTHR33644:SF3	SUPFAM:SSF57850
UniPathway:UPA00143	UniParc:UPI0004EB0C36	InterPro:Ubox_domain	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

BnaC03g22770DBnaC03g22770D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GBL8]

Coordinates

chrLK032132:-:169..2314

Molecular Weight (calculated)

43643.3 Da

IEP (calculated)

6.773

GRAVY (calculated)

-0.682

Length

391 amino acids

Sequence
(BLAST)

001: MTTRVLLLSL PRRRFNPLCA LRTFTLSASP PSPQVSEFSG GKAMSMNDGL DPRFLYHVED ESLRFRVGEP GHKSRELDRR RFESSGFRQG FCGNEKDEMR
101: YSNGDDEDED VVCIRRGSSL DQPGIDSCSS VPAETNRESK DLGSAGWELV VREEDEEEEE DKASLDRRKV MMTNDSSSQC NTQAKRDFAS VEKERGTSVS
201: SWESLKSILS DPVTGALMSD ATILPCGHSF GAGGLKEVKR MKACFTCSQP TSEGSEKPNL SLRIVVHAFR QEEESDHVHS LKRRKERSDQ HKRTFCVPNI
301: TDTPKSSSRG IQCPFSIGDR IIIEGNKRTP PRFVGRKAVI MTHCLNGWYV VKTVDNAESI KLQHCSLAKI PDNSPSEVTV AEMAPPWLSS S

Best Arabidopsis Sequence Match ( AT2G40640.1 )
(BLAST)

001: MSHLRRRRFK LSLCALPVSI DRLLNFPAEK QMSVNDSIDP RFVFHVEDES LRFRVGDSGT KIRELETVGD RHFRTQQGFC GNRIEKDETM YSDGDDEEYD
101: VSIRRRTALI QPGIDSGNNY DSAAAEETNR ESKNPVGWEL VVREDGEGNS TIDRHEMEFK VRITKPDGNV SNSHRNTQQK RDFASVEKER VTTTSVSSWE
201: SLKAILSDPV TGALMNDATI LPCGHSFGAG GLKEVKKMKA CFTCSQPTLE GSEKPNLSLR IVVHAFRQEE DSDHIHTLKR RKERSDQKRS FCIPNITETP
301: KSSRGIQFPF SIGDHIIIEG NKRTPPRFVG RIAVIMTQCL NGWYVVKTVD NSESIKLQHC SLAKISDNSS TKVTVAEMPP SWL

Arabidopsis Description

PUB63U-box domain-containing protein 63 [Source:UniProtKB/Swiss-Prot;Acc:Q58FY4]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.