Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G481900.1 | Wheat | nucleus | 92.38 | 91.57 |
| TraesCS5A01G469100.2 | Wheat | nucleus | 77.13 | 76.23 |
| HORVU5Hr1G111680.4 | Barley | plastid | 78.89 | 71.16 |
| EER90651 | Sorghum | nucleus, plastid | 53.08 | 53.24 |
| Zm00001d034607_P001 | Maize | plastid | 51.32 | 50.58 |
| Os03t0816000-01 | Rice | plastid | 29.33 | 47.39 |
| GSMUA_Achr1P17210_001 | Banana | nucleus | 44.87 | 37.05 |
| PGSC0003DMT400030432 | Potato | nucleus | 40.76 | 32.86 |
| Solyc05g052220.2.1 | Tomato | nucleus | 40.18 | 32.85 |
| Bra000197.1-P | Field mustard | nucleus | 32.84 | 32.75 |
| VIT_13s0067g03030.t01 | Wine grape | nucleus | 41.06 | 31.75 |
| KRH53725 | Soybean | nucleus | 39.59 | 31.54 |
| KRH64207 | Soybean | nucleus | 38.71 | 30.99 |
| AT2G40640.1 | Thale cress | mitochondrion | 30.5 | 27.15 |
| CDY22467 | Canola | mitochondrion | 30.21 | 26.34 |
| CDY69157 | Canola | extracellular, golgi, vacuole | 9.97 | 11.37 |
| TraesCS7B01G331900.1 | Wheat | cytosol | 6.45 | 7.03 |
| TraesCS2B01G252300.1 | Wheat | cytosol | 7.92 | 5.61 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G481600.1 | EnsemblPlantsGene:TraesCS5B01G481600 | Gene3D:3.30.40.10 | InterPro:IPR013083 | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil |
| PANTHER:PTHR33644 | PANTHER:PTHR33644:SF3 | SEG:seg | SUPFAM:SSF57850 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr5B:-:654489968..654493261
Molecular Weight (calculated)
36734.4 Da
IEP (calculated)
5.046
GRAVY (calculated)
-0.775
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPPGPGSA NRALSSSSRG PLSPFPGGAG PFLRHQHPPG GDSDGGASFD EDDDDDDEEE EDGEDQDAEL AARSSQQRRA ASPARIGRPV VNGENGGSQI
101: QEGQQWQLYS CGTEQHDRAS SRGDEEPGSV PREMRVEDGY GVIGRREGGP ASSYWDLLRA HLSDPLTGIL MDDAMILSCG HSYGSSGMQH IYRMKACGKC
201: GQPITENSIR PNLALGLAVQ AFRREEESAK TLKRKRDRLE QDKCGNDDPG PAEVSRGKGV QYPFAVFDRV IIKGNKRTPE RFVGRVAVVT AQCLNGWYVV
301: KTLDNAESVK LQYRSLAKFV DGGGGEPPAV ASNSSQNTSW L
101: QEGQQWQLYS CGTEQHDRAS SRGDEEPGSV PREMRVEDGY GVIGRREGGP ASSYWDLLRA HLSDPLTGIL MDDAMILSCG HSYGSSGMQH IYRMKACGKC
201: GQPITENSIR PNLALGLAVQ AFRREEESAK TLKRKRDRLE QDKCGNDDPG PAEVSRGKGV QYPFAVFDRV IIKGNKRTPE RFVGRVAVVT AQCLNGWYVV
301: KTLDNAESVK LQYRSLAKFV DGGGGEPPAV ASNSSQNTSW L
001: MSGKGLSPAP FNAQPMIVQD ADPLRFRVGE QDPKTREFAA FIGDHRYFAA AAAAAAAANP HPHLEFRQNF YSEKPIIGNP NDSGGSDGED DVDVEEEDED
101: DDLDGNEGDI GMNKDAGEDS VSAGAVIVVG QDNAAYYSQH FKTVEASFVS RNEESSIAAD NGCDFSGRRD LSSSSSNSIE SLRTILSDPT TGSLMADAMI
201: LPCGHTFGAG GIEQVKQMKA CCTCSQPVSE DSITPNLTLR VAVQAFCREE NSQSNHPSKR KREGFDQERR AFGVTNHSGR SRNKSNHFPF AVADRVIIKG
301: NKRTPPRFVG REAVVTTQCL NGWYVVKTLD NAESVKLQYR SLAKAPEDPS AKATPNKMVS NWL
101: DDLDGNEGDI GMNKDAGEDS VSAGAVIVVG QDNAAYYSQH FKTVEASFVS RNEESSIAAD NGCDFSGRRD LSSSSSNSIE SLRTILSDPT TGSLMADAMI
201: LPCGHTFGAG GIEQVKQMKA CCTCSQPVSE DSITPNLTLR VAVQAFCREE NSQSNHPSKR KREGFDQERR AFGVTNHSGR SRNKSNHFPF AVADRVIIKG
301: NKRTPPRFVG REAVVTTQCL NGWYVVKTLD NAESVKLQYR SLAKAPEDPS AKATPNKMVS NWL
Arabidopsis Description
PUB62U-box domain-containing protein 62 [Source:UniProtKB/Swiss-Prot;Acc:Q6DBN5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.