CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular, vacuole

Predictor Summary:

plastid 1
extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi, vacuole
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22467	Canola	mitochondrion	24.08	18.41
Os03t0816000-01	Rice	plastid	11.71	16.59
AT2G40640.1	Thale cress	mitochondrion	20.4	15.93
CDX98826	Canola	nucleus	16.05	13.15
CDX70167	Canola	nucleus	15.72	13.06
HORVU5Hr1G111680.4	Barley	plastid	14.05	11.11
TraesCS5D01G481900.1	Wheat	nucleus	11.71	10.17
Zm00001d034607_P001	Maize	plastid	11.71	10.12
TraesCS5B01G481600.1	Wheat	nucleus	11.37	9.97
CDY42216	Canola	cytosol, mitochondrion, plastid	16.05	9.6
GSMUA_Achr1P17210_001	Banana	nucleus	13.04	9.44
EER90651	Sorghum	nucleus, plastid	10.7	9.41
TraesCS5A01G469100.2	Wheat	nucleus	10.37	8.99
CDY33428	Canola	plastid	15.38	8.36
CDY60118	Canola	nucleus	12.37	7.97
CDY23555	Canola	nucleus	11.71	7.53
CDX95798	Canola	extracellular	0.33	0.88

Protein Annotations

MapMan:35.1	GO:A0A078JUI3	UniProt:A0A078JUI3	EnsemblPlants:CDY69157	ProteinID:CDY69157	ProteinID:CDY69157.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003824	GO:GO:0004842	GO:GO:0005575	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016567
GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00083514001	InterPro:IPR003613	PFscan:PS51698	PANTHER:PTHR33644
PANTHER:PTHR33644:SF3	TMHMM:TMhelix	UniPathway:UPA00143	UniParc:UPI0004EEE5A4	InterPro:Ubox_domain	SEG:seg

Description

BnaA03g56520DBnaA03g56520D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078JUI3]

Coordinates

chrLK038757:+:2790..4435

Molecular Weight (calculated)

33553.3 Da

IEP (calculated)

5.289

GRAVY (calculated)

-0.511

Length

299 amino acids

Sequence
(BLAST)

001: MFRSRFLANN ILGILIYFII LCKTHLKYFF FNSTSYFPSA NYIVFQNFAG KMIRLHNIIN HDDARASLVP PTSSFYNSPR ALRTFTLSAS PPSPQASEFS
101: GGEAMSVNDG LDPRFLYHVE DESLRFRVGE SGPKSRELDH RRFESSGFRQ GFCGNEKEEM RYSNGDEDVC IRRGSSLVQP GIDSCSSIPA ETNRGSKDLA
201: GWELVVREEE EEEEEEEEDK ASLDRRKVMM SNDSSSQCNA QAKRDFASVE KERVNSVSSW ESLKSILSDP VTGALMSDAT ILPCGHSFGA GGLKEVKRM

Best Arabidopsis Sequence Match ( AT2G40640.9 )
(BLAST)

001: MSHLRRRRFK LSLCALPVSI DRLLNFPAEK QMSVNDSIDP RFVFHVEDES LRFRVGDSGT KIRELETVGD RHFRTQQGFC GNRIEKDETM YSDGDDEEYD
101: VSIRRRTALI QPGIDSGNNY DSAAAEETNR ESKNPVGWEL VVREDGEGNS TIDRHEMEFK VRITKPDGNV SNSHRNTQQK RDFASVEKER VTTTSVSSWE
201: SLKAILSDPV TGALMNDATI LPCGHSFGAG GLKEVKKMKA CFTCSQPTLE GSEKPNLSLR IVVHAFRQEE DSDHIHTLKR RKERSDQVCF SNTQ

Arabidopsis Description

PUB63U-box domain-containing protein 63 [Source:UniProtKB/Swiss-Prot;Acc:Q58FY4]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.