Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G481900.1 | Wheat | nucleus | 72.75 | 79.94 |
| TraesCS5B01G481600.1 | Wheat | nucleus | 71.16 | 78.89 |
| TraesCS5A01G469100.2 | Wheat | nucleus | 70.11 | 76.81 |
| EER90651 | Sorghum | nucleus, plastid | 47.62 | 52.94 |
| Zm00001d034607_P001 | Maize | plastid | 46.3 | 50.58 |
| Os03t0816000-01 | Rice | plastid | 28.04 | 50.24 |
| GSMUA_Achr1P17210_001 | Banana | nucleus | 41.53 | 38.01 |
| Solyc05g052220.2.1 | Tomato | nucleus | 37.57 | 34.05 |
| PGSC0003DMT400030432 | Potato | nucleus | 38.1 | 34.04 |
| KRH53725 | Soybean | nucleus | 38.1 | 33.64 |
| KRH64207 | Soybean | nucleus | 37.3 | 33.1 |
| VIT_13s0067g03030.t01 | Wine grape | nucleus | 38.36 | 32.88 |
| Bra000197.1-P | Field mustard | nucleus | 29.63 | 32.75 |
| AT2G40640.1 | Thale cress | mitochondrion | 29.1 | 28.72 |
| CDY22467 | Canola | mitochondrion | 29.1 | 28.13 |
| HORVU6Hr1G094240.3 | Barley | nucleus, plastid | 25.66 | 18.27 |
| CDY69157 | Canola | extracellular, golgi, vacuole | 11.11 | 14.05 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G111680.4 | EnsemblPlantsGene:HORVU5Hr1G111680 | Gene3D:3.30.40.10 | InterPro:IPR013083 | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil |
| PANTHER:PTHR33644 | PANTHER:PTHR33644:SF3 | SEG:seg | SUPFAM:SSF57850 | UniParc:UPI000B4740AF | UniProt:A0A287SR12 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr5H:+:636943684..636947431
Molecular Weight (calculated)
41056.8 Da
IEP (calculated)
5.955
GRAVY (calculated)
-0.749
Length
378 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPLYQHTAY CSRGQQTFPP TPNPAVRSAA AMASPPGPGS AAHRQVPSSS RGPLSPFPSG VARAAGPFLR HQHPPGGDSD GGASMDEFDE DDEDDDEEEE
101: EEGQDAELAA RSTQQRRASS PGIRRPVTNG ENGVRQIQEG QQWQLYSCGT EQQGRASSRG DEEPGSVPRE MRVEDGYGVI GRREGGPASS YWDLLRAHLS
201: DPLTGILMDD AMILSCGHSY GSTGMQHIYR MKACGKCGQP ITEDSIRPNL ALGLAVQAFR REEESAKTLK RKRDRLEQDK CGNNDPNPVE LSRGKGVQYP
301: FAVFDRVIIK GNKRTPERFV GRVAVVTAQC LNGWYVVKTL DNAESVKLQY RSLAKFVDGG GGGEPPVVSN SSQNASWL
101: EEGQDAELAA RSTQQRRASS PGIRRPVTNG ENGVRQIQEG QQWQLYSCGT EQQGRASSRG DEEPGSVPRE MRVEDGYGVI GRREGGPASS YWDLLRAHLS
201: DPLTGILMDD AMILSCGHSY GSTGMQHIYR MKACGKCGQP ITEDSIRPNL ALGLAVQAFR REEESAKTLK RKRDRLEQDK CGNNDPNPVE LSRGKGVQYP
301: FAVFDRVIIK GNKRTPERFV GRVAVVTAQC LNGWYVVKTL DNAESVKLQY RSLAKFVDGG GGGEPPVVSN SSQNASWL
001: MSGKGLSPAP FNAQPMIVQD ADPLRFRVGE QDPKTREFAA FIGDHRYFAA AAAAAAAANP HPHLEFRQNF YSEKPIIGNP NDSGGSDGED DVDVEEEDED
101: DDLDGNEGDI GMNKDAGEDS VSAGAVIVVG QDNAAYYSQH FKTVEASFVS RNEESSIAAD NGCDFSGRRD LSSSSSNSIE SLRTILSDPT TGSLMADAMI
201: LPCGHTFGAG GIEQVKQMKA CCTCSQPVSE DSITPNLTLR VAVQAFCREE NSQSNHPSKR KREGFDQERR AFGVTNHSGR SRNKSNHFPF AVADRVIIKG
301: NKRTPPRFVG REAVVTTQCL NGWYVVKTLD NAESVKLQYR SLAKAPEDPS AKATPNKMVS NWL
101: DDLDGNEGDI GMNKDAGEDS VSAGAVIVVG QDNAAYYSQH FKTVEASFVS RNEESSIAAD NGCDFSGRRD LSSSSSNSIE SLRTILSDPT TGSLMADAMI
201: LPCGHTFGAG GIEQVKQMKA CCTCSQPVSE DSITPNLTLR VAVQAFCREE NSQSNHPSKR KREGFDQERR AFGVTNHSGR SRNKSNHFPF AVADRVIIKG
301: NKRTPPRFVG REAVVTTQCL NGWYVVKTLD NAESVKLQYR SLAKAPEDPS AKATPNKMVS NWL
Arabidopsis Description
PUB62U-box domain-containing protein 62 [Source:UniProtKB/Swiss-Prot;Acc:Q6DBN5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.