Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY60118 | Canola | nucleus | 99.35 | 99.35 |
| AT3G12940.2 | Thale cress | nucleus | 88.15 | 83.47 |
| PGSC0003DMT400057242 | Potato | nucleus | 71.12 | 69.92 |
| VIT_19s0027g00600.t01 | Wine grape | cytosol | 74.35 | 69.0 |
| Solyc07g066450.2.1 | Tomato | nucleus | 71.12 | 66.53 |
| KRH13671 | Soybean | cytosol | 59.05 | 64.47 |
| GSMUA_Achr11P... | Banana | cytosol, extracellular, peroxisome | 65.09 | 63.85 |
| KRH43789 | Soybean | nucleus | 68.75 | 63.29 |
| OQU89978 | Sorghum | cytosol, nucleus, peroxisome | 59.48 | 58.35 |
| TraesCS2D01G235000.1 | Wheat | cytosol | 59.27 | 57.17 |
| TraesCS2B01G252300.1 | Wheat | cytosol | 58.84 | 56.76 |
| Os07t0496900-02 | Rice | nucleus | 59.05 | 53.31 |
| Zm00001d006430_P001 | Maize | cytosol | 59.48 | 53.28 |
| Zm00001d021542_P001 | Maize | cytosol | 26.08 | 45.66 |
| Bra038238.1-P | Field mustard | plastid | 27.37 | 23.01 |
| Bra000197.1-P | Field mustard | nucleus | 7.76 | 10.53 |
| Bra009097.1-P | Field mustard | nucleus | 7.97 | 10.28 |
Protein Annotations
Description
AT3G12940 (E=7e-235) | unknown protein
Coordinates
chrA05:+:21111935..21113849
Molecular Weight (calculated)
51820.4 Da
IEP (calculated)
6.791
GRAVY (calculated)
-0.437
Length
464 amino acids
Sequence
(BLAST)
(BLAST)
001: MAANGLPTLG RVKLCDLLPT EGSPSDSYKL AVSTLSQSLA QYSAAIIQFP ATDAALLRSG LDSARLYFHQ RDSYPPTIHT TNDSREWCKT SGYYSDPHSW
101: QESYEYRPGL TFTESAEFPP SGLPDIFGLL GKASRLVLDA VGFYLNLRSS PFTEILDNVP LRSNEVSSSV LSVCCYARPS FHHHNLAEDE QLLLYSDHDH
201: QLDKSLISFV KSDKAGLHVR DMHGQWILVD VDLGPQEAVV YPGLALYQAT AGYVSPAVYR TDLNSMQGSI EGRFSLAFKL MPKSMTNLSC SEMRAAGHGV
301: DAQFLIPVSV DDFMQRPHSN DELFNRQTLQ SFSVPQSQDG SMKQMKKRKK SDSRLKPLPP SKRLRLEAQR VLKERVQEIA DKKGIKLRFC NPKDCESNHN
401: TMNSPCAHIK MEIGWPQGVP FVHPHDLPNK AKIGFLETYE PGWSEAHDME LSLSEAAQGN QHVT
101: QESYEYRPGL TFTESAEFPP SGLPDIFGLL GKASRLVLDA VGFYLNLRSS PFTEILDNVP LRSNEVSSSV LSVCCYARPS FHHHNLAEDE QLLLYSDHDH
201: QLDKSLISFV KSDKAGLHVR DMHGQWILVD VDLGPQEAVV YPGLALYQAT AGYVSPAVYR TDLNSMQGSI EGRFSLAFKL MPKSMTNLSC SEMRAAGHGV
301: DAQFLIPVSV DDFMQRPHSN DELFNRQTLQ SFSVPQSQDG SMKQMKKRKK SDSRLKPLPP SKRLRLEAQR VLKERVQEIA DKKGIKLRFC NPKDCESNHN
401: TMNSPCAHIK MEIGWPQGVP FVHPHDLPNK AKIGFLETYE PGWSEAHDME LSLSEAAQGN QHVT
001: MMAGNGMPTL GRVKVCDLVP SEGLPSDSYK LAVTTLSQSL AQYSAAIIQF PASDGALLRS GLDSARLYFH QRDSYPATNN MIHTNDSQEW CKTSGYYADP
101: QSWQESYEYR PGLTPTEPSN SMEFPPAGLP DIFALLGKAA RVVLDAIGFY LNLRSCPFTE ILDNVPLRNC EVSSSVLSVC CYARPSFHGA QHHSLTEDEQ
201: LILYSDHDHQ LDKSLISFVK SDKAGLHIRD MHGQWILVDV DLGPQEAVVY PGLALYQATA GYVSPAVHRT DLNSLQGSIE GRFSLAFKLM PKSMTNLSCS
301: EMRAAGHGVE AQFQLPVSVD DFMQRSHSND ELFNRQTLQS FIVPQSQDGS MKQLKKRRKS DSRCKPLPPS KRLRLEAQRV LKERVQEIAD KKGIKLRFCN
401: LKECENNHNV MNSPCANIRR EIGWPHGVPF VHPHDLPNKA KIGFLETYEP GWSETHDMEF SLSETAQGNQ HVTN
101: QSWQESYEYR PGLTPTEPSN SMEFPPAGLP DIFALLGKAA RVVLDAIGFY LNLRSCPFTE ILDNVPLRNC EVSSSVLSVC CYARPSFHGA QHHSLTEDEQ
201: LILYSDHDHQ LDKSLISFVK SDKAGLHIRD MHGQWILVDV DLGPQEAVVY PGLALYQATA GYVSPAVHRT DLNSLQGSIE GRFSLAFKLM PKSMTNLSCS
301: EMRAAGHGVE AQFQLPVSVD DFMQRSHSND ELFNRQTLQS FIVPQSQDGS MKQLKKRRKS DSRCKPLPPS KRLRLEAQRV LKERVQEIAD KKGIKLRFCN
401: LKECENNHNV MNSPCANIRR EIGWPHGVPF VHPHDLPNKA KIGFLETYEP GWSETHDMEF SLSETAQGNQ HVTN
Arabidopsis Description
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A178VI87]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.