Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os12t0560400-01 | Rice | nucleus | 46.25 | 35.58 |
| Os03t0102200-01 | Rice | cytosol, mitochondrion, nucleus | 46.25 | 32.46 |
| KXG29100 | Sorghum | nucleus | 46.25 | 32.17 |
| GSMUA_Achr7P05620_001 | Banana | nucleus | 40.0 | 28.07 |
| Os07t0615800-00 | Rice | nucleus | 35.0 | 24.14 |
Protein Annotations
| EnsemblPlants:Os11t0676650-00 | EnsemblPlantsGene:Os11g0676650 | Gene3D:2.20.25.10 | PANTHER:PTHR11239 | PANTHER:PTHR11239:SF15 | ProteinID:BAT15226.1 |
| SUPFAM:SSF57783 | UniParc:UPI0003939BAE | UniProt:A0A0N7KTC4 | MapMan:15.1.6.7 | : | : |
Description
Similar to DNA-directed RNA polymerase subunit. (Os11t0676650-00)
Coordinates
chr11:+:27331081..27339928
Molecular Weight (calculated)
8814.3 Da
IEP (calculated)
7.347
GRAVY (calculated)
-0.459
Length
80 amino acids
Sequence
(BLAST)
(BLAST)
1: LNLQFPESQE VAGSRATART ITWCTTPPGD FTQVLQDVAG DPTLPRTKSV RCAACGHGEA VFFQSQTKQF VQSSELHRNY
001: MFSIGLKLQL FSTFAAYEPL ILFFFEMFSN NILYPKEDKE QSILLYACRN CDHQEAADNN CVYRNEVHHS VSEQTQILSD VASDPTLPRT KAVRCAKCQH
101: GEAVFFQATA RGEEGMTLFF VCCNPNCSHR WRE
101: GEAVFFQATA RGEEGMTLFF VCCNPNCSHR WRE
Arabidopsis Description
NRPB9BRNA polymerases M/15 Kd subunit [Source:TAIR;Acc:AT4G16265]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.