Factsheet for Os12t0560400-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
YLoc:	nucleus

nucleus: 19621931

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G089100.1	Wheat	nucleus	97.12	88.6
TraesCS5B01G095100.1	Wheat	nucleus	97.12	88.6
TraesCS5D01G101200.1	Wheat	nucleus	97.12	88.6
EES17194	Sorghum	nucleus	95.19	86.84
Zm00001d041609_P001	Maize	nucleus	94.23	85.96
GSMUA_Achr7P05620_001	Banana	nucleus	88.46	80.7
Os03t0102200-01	Rice	cytosol, mitochondrion, nucleus	68.27	62.28
HORVU5Hr1G023090.3	Barley	cytosol	82.69	54.78
Os11t0676650-00	Rice	cytosol, nucleus	35.58	46.25
Os07t0615800-00	Rice	nucleus	45.19	40.52

Protein Annotations

MapMan:15.1.6.7	Gene3D:2.20.25.10	ProteinID:BAF30036.1	ProteinID:BAT17637.1	InterPro:DNA-dir_RNA_pol_M/15kDasu	GO:GO:0001193
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0003899	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005665	GO:GO:0005730
GO:GO:0006139	GO:GO:0006259	GO:GO:0006283	GO:GO:0006351	GO:GO:0006367	GO:GO:0006379
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009058	GO:GO:0009987
GO:GO:0016740	GO:GO:0046872	InterPro:IPR001222	EnsemblPlantsGene:Os12g0560400	EnsemblPlants:Os12t0560400-01	PFAM:PF01096
PIRSF:PIRSF005586	PFscan:PS51133	PANTHER:PTHR11239	PANTHER:PTHR11239:SF15	UniProt:Q0IMM9	InterPro:Rpa12/Rpb9/Rpc10/TFS
SMART:SM00440	SMART:SM00661	SUPFAM:SSF57783	UniParc:UPI0000DD9F16	InterPro:Zn_ribbon_RPB9_C	InterPro:Znf_TFIIS

Description

Similar to DNA-directed RNA polymerase II 14.5 kDa polypeptide (EC 2.7.7.6) (RPB9) (RPB14.5). (Os12t0560400-01)

Coordinates

chr12:+:22947030..22948075

Molecular Weight (calculated)

11743.8 Da

IEP (calculated)

6.644

GRAVY (calculated)

-0.427

Length

104 amino acids

Sequence
(BLAST)

001: NNILYPKEDR DQKILLYACR NCDHQEVADN NCVYRNVVHH SAGEFTQVLQ DVAGDPTLPR TKAVRCAVCG HGEAVFFQAT ARGEEGMTLF FVCCNPSCGH
101: RWRE

Best Arabidopsis Sequence Match ( AT4G16265.2 )
(BLAST)

001: MFSIGLKLQL FSTFAAYEPL ILFFFEMFSN NILYPKEDKE QSILLYACRN CDHQEAADNN CVYRNEVHHS VSEQTQILSD VASDPTLPRT KAVRCAKCQH
101: GEAVFFQATA RGEEGMTLFF VCCNPNCSHR WRE

Arabidopsis Description

NRPB9BRNA polymerases M/15 Kd subunit [Source:TAIR;Acc:AT4G16265]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.