Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G089100.1 | Wheat | nucleus | 63.06 | 86.84 |
| TraesCS5B01G095100.1 | Wheat | nucleus | 63.06 | 86.84 |
| TraesCS5D01G101200.1 | Wheat | nucleus | 63.06 | 86.84 |
| Os12t0560400-01 | Rice | nucleus | 54.78 | 82.69 |
| EES17194 | Sorghum | nucleus | 59.87 | 82.46 |
| GSMUA_Achr7P05620_001 | Banana | nucleus | 55.41 | 76.32 |
| Zm00001d004096_P001 | Maize | cytosol, nucleus | 30.57 | 57.83 |
| HORVU2Hr1G031100.1 | Barley | cytosol | 15.29 | 48.98 |
| HORVU5Hr1G013420.1 | Barley | nucleus | 18.47 | 40.28 |
| HORVU2Hr1G031050.2 | Barley | cytosol, nucleus | 26.75 | 35.9 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G023090.3 | EnsemblPlantsGene:HORVU5Hr1G023090 | Gene3D:2.20.25.10 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:DNA-dir_RNA_pol-M_15_CS | InterPro:DNA-dir_RNA_pol_M/15kDasu | PANTHER:PTHR11239 |
| PANTHER:PTHR11239:SF15 | PFAM:PF02150 | ScanProsite:PS01030 | SEG:seg | SMART:SM00661 | SUPFAM:SSF57783 |
| UniParc:UPI000B47B2B1 | UniProt:A0A287QMS3 | MapMan:15.1.6.7 | : | : | : |
Description
No Description!
Coordinates
chrchr5H:-:120509614..120511501
Molecular Weight (calculated)
15663.5 Da
IEP (calculated)
5.611
GRAVY (calculated)
-0.313
Length
157 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAMKFCREC NNILYPKEDR DQKVLLFACR NCDHQEVADN NCVYRNVVHH SAGEFTQVLQ DVAGDPTLPR TKEVRCAVCG HGEAVFFQAT ARGEEGMTLX
101: XXXXXXXXXX XXXXRSSSSA ATRAAAIDGE NDVSISQPMM NSTDATVCVF PRDIFPK
101: XXXXXXXXXX XXXXRSSSSA ATRAAAIDGE NDVSISQPMM NSTDATVCVF PRDIFPK
001: MSTMKFCREC NNILYPKEDK EQKILLYACR NCDHQEVADN SCVYRNEVHH SVSERTQILT DVASDPTLPR TKAVRCSKCQ HREAVFFQAT ARGEEGMTLF
101: FVCCNPNCGH RWRE
101: FVCCNPNCGH RWRE
Arabidopsis Description
NRPB9ADNA-directed RNA polymerases II, IV and V subunit 9A [Source:UniProtKB/Swiss-Prot;Acc:Q6NLH0]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.