Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G089100.1 | Wheat | nucleus | 100.0 | 100.0 |
| TraesCS5B01G095100.1 | Wheat | nucleus | 100.0 | 100.0 |
| Os12t0560400-01 | Rice | nucleus | 88.6 | 97.12 |
| EES17194 | Sorghum | nucleus | 94.74 | 94.74 |
| GSMUA_Achr7P05620_001 | Banana | nucleus | 87.72 | 87.72 |
| HORVU5Hr1G023090.3 | Barley | cytosol | 86.84 | 63.06 |
| Zm00001d004096_P001 | Maize | cytosol, nucleus | 39.47 | 54.22 |
| TraesCS2D01G176400.1 | Wheat | cytosol, mitochondrion, nucleus | 44.74 | 44.74 |
Protein Annotations
| MapMan:15.1.6.7 | Gene3D:2.20.25.10 | InterPro:DNA-dir_RNA_pol-M_15_CS | InterPro:DNA-dir_RNA_pol_M/15kDasu | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006379 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008270 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR001222 | PFAM:PF01096 | PFAM:PF02150 |
| PIRSF:PIRSF005586 | ScanProsite:PS01030 | PFscan:PS51133 | PANTHER:PTHR11239 | PANTHER:PTHR11239:SF15 | InterPro:Rpa12/Rpb9/Rpc10/TFS |
| SMART:SM00440 | SMART:SM00661 | SUPFAM:SSF57783 | EnsemblPlantsGene:TraesCS5D01G101200 | EnsemblPlants:TraesCS5D01G101200.1 | InterPro:Zn_ribbon_RPB9_C |
| InterPro:Znf_TFIIS | TIGR:cd10508 | : | : | : | : |
Description
No Description!
Coordinates
chr5D:-:114012902..114013997
Molecular Weight (calculated)
12959.4 Da
IEP (calculated)
6.637
GRAVY (calculated)
-0.396
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAMKFCREC NNILYPKEDR DQKVLLFACR NCDHQEVADN NCVYRNVVHH SAGEFTQVLQ DVAGDPTLPR TKEVRCAVCG HGEAVFFQAT ARGEEGMTLF
101: FVCCNPSCGH RWRE
101: FVCCNPSCGH RWRE
001: MSTMKFCREC NNILYPKEDK EQSILLYACR NCDHQEAADN NCVYRNEVHH SVSEQTQILS DVASDPTLPR TKAVRCAKCQ HGEAVFFQAT ARGEEGMTLF
101: FVCCNPNCSH RWRE
101: FVCCNPNCSH RWRE
Arabidopsis Description
NRPB9BRNA polymerases M/15 Kd subunit [Source:TAIR;Acc:AT4G16265]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.