CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36994	Soybean	nucleus	96.49	96.49
VIT_05s0077g01170.t01	Wine grape	nucleus	92.11	92.11
GSMUA_Achr10P...	Banana	nucleus	88.6	88.6
TraesCS5A01G540000.1	Wheat	nucleus	82.46	82.46
TraesCS4B01G374000.1	Wheat	nucleus	81.58	81.58
EES11806	Sorghum	nucleus	79.82	79.82
EES19658	Sorghum	nucleus	78.95	78.95
Os03t0102200-01	Rice	cytosol, mitochondrion, nucleus	78.07	78.07
KRH50750	Soybean	nucleus	71.93	71.93
Zm00001d004409_P002	Maize	nucleus	59.65	60.18

Protein Annotations

EntrezGene:100802125	MapMan:15.1.6.7	Gene3D:2.20.25.10	EMBL:ACUP02009258	InterPro:DNA-dir_RNA_pol-M_15_CS	InterPro:DNA-dir_RNA_pol_M/15kDasu
EnsemblPlantsGene:GLYMA_15G142700	GO:GO:0001193	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0003899
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0005665	GO:GO:0005730	GO:GO:0006139	GO:GO:0006259	GO:GO:0006283	GO:GO:0006351
GO:GO:0006367	GO:GO:0006379	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008270
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0046872	UniProt:I1MGG3	InterPro:IPR001222
EnsemblPlants:KRH11971	ProteinID:KRH11971	ProteinID:KRH11971.1	PFAM:PF01096	PFAM:PF02150	PIRSF:PIRSF005586
ScanProsite:PS01030	PFscan:PS51133	PANTHER:PTHR11239	PANTHER:PTHR11239:SF15	InterPro:Rpa12/Rpb9/Rpc10/TFS	SMART:SM00440
SMART:SM00661	SUPFAM:SSF57783	UniParc:UPI000233BCE8	InterPro:Zn_ribbon_RPB9_C	InterPro:Znf_TFIIS	:

Description

hypothetical protein

Coordinates

chr15:-:11697903..11700444

Molecular Weight (calculated)

13189.7 Da

IEP (calculated)

6.858

GRAVY (calculated)

-0.556

Length

114 amino acids

Sequence
(BLAST)

001: MSAMKFCREC NNILYPKEDR EQKVLLFACR NCDHQEVADN FCVYRNEIQH PVGERTQVLQ DVAADPTLPR TKSVRCTQCN HGEAVFFQAT ARGEEGMTLF
101: FVCCNPNCGH RWRD

Best Arabidopsis Sequence Match ( AT3G16980.1 )
(BLAST)

001: MSTMKFCREC NNILYPKEDK EQKILLYACR NCDHQEVADN SCVYRNEVHH SVSERTQILT DVASDPTLPR TKAVRCSKCQ HREAVFFQAT ARGEEGMTLF
101: FVCCNPNCGH RWRE

Arabidopsis Description

NRPB9ADNA-directed RNA polymerases II, IV and V subunit 9A [Source:UniProtKB/Swiss-Prot;Acc:Q6NLH0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.