Factsheet for Solyc01g015210.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 1
nucleus 3
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007200	Potato	cytosol	55.63	48.17
Solyc03g043580.1.1	Tomato	cytosol	50.7	44.58
Solyc03g044110.1.1	Tomato	nucleus	49.65	43.65
Solyc01g034190.1.1	Tomato	cytoskeleton, cytosol, nucleus	14.79	43.3
Solyc03g042510.1.1	Tomato	nucleus	28.87	42.49
Solyc03g042500.1.1	Tomato	mitochondrion	25.7	35.96
Solyc11g045450.1.1	Tomato	cytosol	34.15	32.66
Solyc03g043570.1.1	Tomato	cytosol	10.56	22.56
Solyc02g065350.2.1	Tomato	mitochondrion	26.06	22.36
KRG90690	Soybean	cytosol, mitochondrion, nucleus	22.18	21.14
KRH46517	Soybean	nucleus	19.01	21.09
Solyc04g015500.2.1	Tomato	cytosol	15.49	20.28
KRG94732	Soybean	nucleus	17.25	19.6
KRG90691	Soybean	nucleus	18.31	19.48
KRH46518	Soybean	nucleus	19.37	19.3
KRH54937	Soybean	nucleus	19.72	18.3
KRH18416	Soybean	nucleus	18.31	16.99
KRG99575	Soybean	nucleus	20.07	16.57
KRH49477	Soybean	nucleus	18.66	16.46
KRH38154	Soybean	nucleus	20.77	16.39
KRH06798	Soybean	cytosol	20.07	15.7
KRH36062	Soybean	nucleus	16.9	13.08
KRH36061	Soybean	golgi, nucleus	17.61	12.92
KRH38192	Soybean	endoplasmic reticulum, golgi	20.07	10.8
KRG90686	Soybean	nucleus	16.2	10.7
KRG90687	Soybean	nucleus	16.9	10.57
Solyc08g068540.2.1	Tomato	nucleus	18.31	10.42
VIT_07s0255g00070.t01	Wine grape	nucleus	12.32	10.0
Solyc08g029090.2.1	Tomato	nucleus	20.07	9.76
Solyc07g054630.2.1	Tomato	nucleus	18.66	9.17
Solyc05g017730.1.1	Tomato	cytosol	3.17	7.56
Solyc02g021260.1.1	Tomato	nucleus, plasma membrane	17.96	3.87

Protein Annotations

Gene3D:2.40.330.10	MapMan:35.2	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300	UniProt:K4AUF5	PFAM:PF02362	PFscan:PS50863
PANTHER:PTHR31674	PANTHER:PTHR31674:SF1	SMART:SM01019	SUPFAM:SSF101936	EnsemblPlantsGene:Solyc01g015210.1	EnsemblPlants:Solyc01g015210.1.1
UniParc:UPI00027626FE	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1:+:17899936..17901263

Molecular Weight (calculated)

32632.1 Da

IEP (calculated)

5.818

GRAVY (calculated)

-0.223

Length

284 amino acids

Sequence
(BLAST)

001: MVNSSSNYPN FIKIICSSDE LCHLRNPLVF AKSHCKNMLS PVFLESPHGK SWEVEVIMSQ DEIWIAKGWK SFCPYYSISV KSLLMFTYIP CSHFDVTIYD
101: QSTSIIEYPI HQDIEVDEEE DVIPFFQYNA IAIEEDIPVY LQANANVIEQ DKEVGEANSR SEQVNPKIYR SLHNLLNING DKLHFEMVIK KAHSTYMTIP
201: LRYSQGTYII NMANMRLVSE EGEEWRVDIG YNAGKVIIKG GWSAFQKDNK ISNGETWRFK LIRGPIANVL QVHKNPTLLL IATN

Best Arabidopsis Sequence Match ( AT4G31640.1 )
(BLAST)

001: MKNPTLFAPK SPHFFQPILP GFKSHIKIPV KFFSKHIEGK HEGNTVYLRS YPSRRTWKVK MEGHKLTEGW KEFVEAHDLR VGDFVVFKHK GDMLFHVTAI
101: GPSCCEVQYA PSRSHDRNEE SDEIGESSRN EKIIEENVKT EPDQFSPDLT CFSQSVTASN LTRDLVGIPR DFAKRYGLNI GRHEIVLMDE EGNTWESEVK
201: SYKSGRVFIA GGWTSLCTAN KLEVGDSCTF KLLRNPKIPV FRLCSRPKAG AEARPHKRSR VQSSSGGSRQ KHDVRQKLDE EGGPSRCTRS SNKATGDQEK
301: LQQTQSCFIF DHVAKVKQSV EDTLNSIRRF RAKLETKEHN LEALLQETKT KL

Arabidopsis Description

REM5B3 domain-containing protein REM5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SB80]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.