Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400070034 | Potato | cytoskeleton, cytosol, nucleus | 77.42 | 73.68 |
| Solyc01g034190.1.1 | Tomato | cytoskeleton, cytosol, nucleus | 11.52 | 25.77 |
| Solyc03g042510.1.1 | Tomato | nucleus | 20.74 | 23.32 |
| KRH46517 | Soybean | nucleus | 24.42 | 20.7 |
| Solyc03g042500.1.1 | Tomato | mitochondrion | 18.89 | 20.2 |
| KRG94732 | Soybean | nucleus | 21.66 | 18.8 |
| Solyc02g065350.2.1 | Tomato | mitochondrion | 27.19 | 17.82 |
| KRG90691 | Soybean | nucleus | 21.2 | 17.23 |
| KRH46518 | Soybean | nucleus | 22.58 | 17.19 |
| Solyc01g015210.1.1 | Tomato | nucleus | 20.28 | 15.49 |
| KRH54937 | Soybean | nucleus | 21.66 | 15.36 |
| KRH18416 | Soybean | nucleus | 21.2 | 15.03 |
| Solyc03g043580.1.1 | Tomato | cytosol | 22.12 | 14.86 |
| Solyc03g044110.1.1 | Tomato | nucleus | 21.66 | 14.55 |
| KRG90690 | Soybean | cytosol, mitochondrion, nucleus | 19.35 | 14.09 |
| Solyc08g029090.2.1 | Tomato | nucleus | 36.41 | 13.53 |
| KRH49477 | Soybean | nucleus | 19.82 | 13.35 |
| KRH06798 | Soybean | cytosol | 22.12 | 13.22 |
| KRG99575 | Soybean | nucleus | 20.74 | 13.08 |
| Solyc11g045450.1.1 | Tomato | cytosol | 16.59 | 12.12 |
| Solyc03g043570.1.1 | Tomato | cytosol | 7.37 | 12.03 |
| VIT_07s0255g00070.t01 | Wine grape | nucleus | 18.89 | 11.71 |
| KRH38154 | Soybean | nucleus | 19.35 | 11.67 |
| KRH36061 | Soybean | golgi, nucleus | 18.43 | 10.34 |
| Solyc08g068540.2.1 | Tomato | nucleus | 23.5 | 10.22 |
| KRH36062 | Soybean | nucleus | 16.59 | 9.81 |
| Solyc07g054630.2.1 | Tomato | nucleus | 23.96 | 9.0 |
| KRH38192 | Soybean | endoplasmic reticulum, golgi | 21.66 | 8.9 |
| KRG90686 | Soybean | nucleus | 17.51 | 8.84 |
| KRG90687 | Soybean | nucleus | 17.05 | 8.15 |
| Solyc05g017730.1.1 | Tomato | cytosol | 3.69 | 6.72 |
| Solyc02g021260.1.1 | Tomato | nucleus, plasma membrane | 14.75 | 2.43 |
Protein Annotations
| Gene3D:2.40.330.10 | MapMan:35.1 | InterPro:B3_DNA-bd | InterPro:DNA-bd_pseudobarrel_sf | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | InterPro:IPR003340 | InterPro:IPR015300 | UniProt:K4BQ52 | PFAM:PF02362 | PFscan:PS50863 |
| PANTHER:PTHR31674 | PANTHER:PTHR31674:SF1 | SMART:SM01019 | SUPFAM:SSF101936 | EnsemblPlantsGene:Solyc04g015500.2 | EnsemblPlants:Solyc04g015500.2.1 |
| UniParc:UPI0002766BC3 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4:+:5717054..5718455
Molecular Weight (calculated)
24594.4 Da
IEP (calculated)
5.001
GRAVY (calculated)
-0.479
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MVDRREDHLA ETAARREKQP AGMASRQGQG EPRPVDIPER TPHFFKIILS PHASKLHIPD EFVTEHGANL GDIVLLEVPN GVVWKVRLLN SSGMVWLNEG
101: WNKFKEYYSI GCGYFLLFRY KGNSQFCVFI FDLSASEIEY PPGPNEDMTP ENRSVLCVRL EENGINLPPP GEPPKEKRIN LTPPNDPPEE DVIYLPPPGI
201: YTMEELSLIS MPSRPKV
101: WNKFKEYYSI GCGYFLLFRY KGNSQFCVFI FDLSASEIEY PPGPNEDMTP ENRSVLCVRL EENGINLPPP GEPPKEKRIN LTPPNDPPEE DVIYLPPPGI
201: YTMEELSLIS MPSRPKV
001: MPRPFFHKLI FSSTIQEKRL RVPDKFVSKF KDELSVAVAL TVPDGHVWRV GLRKADNKIW FQDGWQEFVD RYSIRIGYLL IFRYEGNSAF SVYIFNLSHS
101: EINYHSTGLM DSAHNHFKRA RLFEDLEDED AEVIFPSSVY PSPLPESTVP ANKGYASSAI QTLFTGPVKA EEPTPTPKIP KKRGRKKKNA DPEEINSSAP
201: RDDDPENRSK FYESASARKR TVTAEERERA INAAKTFEPT NPFFRVVLRP SYLYRGCIMY LPSGFAEKYL SGISGFIKVQ LAEKQWPVRC LYKAGRAKFS
301: QGWYEFTLEN NLGEGDVCVF ELLRTRDFVL KVTAFRVNEY V
101: EINYHSTGLM DSAHNHFKRA RLFEDLEDED AEVIFPSSVY PSPLPESTVP ANKGYASSAI QTLFTGPVKA EEPTPTPKIP KKRGRKKKNA DPEEINSSAP
201: RDDDPENRSK FYESASARKR TVTAEERERA INAAKTFEPT NPFFRVVLRP SYLYRGCIMY LPSGFAEKYL SGISGFIKVQ LAEKQWPVRC LYKAGRAKFS
301: QGWYEFTLEN NLGEGDVCVF ELLRTRDFVL KVTAFRVNEY V
Arabidopsis Description
VRN1AP2/B3-like transcriptional factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQ83]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.