Factsheet for PGSC0003DMT400070034

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
peroxisome 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g015500.2.1	Tomato	cytosol	73.68	77.42
PGSC0003DMT400096938	Potato	nucleus	21.05	26.09
KRH46517	Soybean	nucleus	23.68	21.09
KRG94732	Soybean	nucleus	21.05	19.2
PGSC0003DMT400007199	Potato	nucleus	25.88	17.72
KRG90691	Soybean	nucleus	20.61	17.6
KRH46518	Soybean	nucleus	21.93	17.54
KRH54937	Soybean	nucleus	20.61	15.36
PGSC0003DMT400043852	Potato	nucleus	24.12	15.24
KRH18416	Soybean	nucleus	20.18	15.03
KRG99575	Soybean	nucleus	22.37	14.83
KRH06798	Soybean	cytosol	22.37	14.05
KRG90690	Soybean	cytosol, mitochondrion, nucleus	17.98	13.76
PGSC0003DMT400007200	Potato	cytosol	19.74	13.72
PGSC0003DMT400091092	Potato	nucleus	16.23	12.37
KRH49477	Soybean	nucleus	17.11	12.11
KRH38154	Soybean	nucleus	18.42	11.67
VIT_07s0255g00070.t01	Wine grape	nucleus	16.67	10.86
KRH36061	Soybean	golgi, nucleus	18.42	10.85
PGSC0003DMT400037688	Potato	nucleus	34.21	10.47
KRH36062	Soybean	nucleus	15.79	9.81
KRH38192	Soybean	endoplasmic reticulum, golgi	21.49	9.28
PGSC0003DMT400085817	Potato	nucleus	20.61	9.02
KRG90687	Soybean	nucleus	17.54	8.81
KRG90686	Soybean	nucleus	16.23	8.6
PGSC0003DMT400047299	Potato	nucleus	14.04	6.03

Protein Annotations

EntrezGene:102584288	Gene3D:2.40.330.10	MapMan:35.1	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300	UniProt:M1CLL6	PFAM:PF02362
EnsemblPlantsGene:PGSC0003DMG400027236	PGSC:PGSC0003DMG400027236	EnsemblPlants:PGSC0003DMT400070034	PFscan:PS50863	PANTHER:PTHR31674	PANTHER:PTHR31674:SF1
SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI00029654AF	RefSeq:XP_006350211.1	:	:

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400027236]

Coordinates

chr4:+:9810358..9815285

Molecular Weight (calculated)

25630.5 Da

IEP (calculated)

4.442

GRAVY (calculated)

-0.517

Length

228 amino acids

Sequence
(BLAST)

001: MSLPQEEQPV EMVDRREEHP AETAARPEKQ PAGMANRQGQ GEPKPVDIPE ITPHFFKIIL SPHASKLHIP NEFVTEHGAN LGDIVLLEVP NGVVWKIKLL
101: NSSGMVWLNE GWNKFKEYYS IACGYFLLFR YKGNSQFSVF IFDLSASEIE YPPGPNEDMT PENRSVLCVP PEENGINLTP PGEPPKENRI NLTPPDDPPE
201: EDVIYLPPPG IYTMEELSLS SMPSRPKV

Best Arabidopsis Sequence Match ( AT3G18990.1 )
(BLAST)

001: MPRPFFHKLI FSSTIQEKRL RVPDKFVSKF KDELSVAVAL TVPDGHVWRV GLRKADNKIW FQDGWQEFVD RYSIRIGYLL IFRYEGNSAF SVYIFNLSHS
101: EINYHSTGLM DSAHNHFKRA RLFEDLEDED AEVIFPSSVY PSPLPESTVP ANKGYASSAI QTLFTGPVKA EEPTPTPKIP KKRGRKKKNA DPEEINSSAP
201: RDDDPENRSK FYESASARKR TVTAEERERA INAAKTFEPT NPFFRVVLRP SYLYRGCIMY LPSGFAEKYL SGISGFIKVQ LAEKQWPVRC LYKAGRAKFS
301: QGWYEFTLEN NLGEGDVCVF ELLRTRDFVL KVTAFRVNEY V

Arabidopsis Description

VRN1AP2/B3-like transcriptional factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQ83]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.