Factsheet for PGSC0003DMT400037688

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g029090.2.1	Tomato	nucleus	45.37	57.88
PGSC0003DMT400070034	Potato	cytoskeleton, cytosol, nucleus	10.47	34.21
KRH46517	Soybean	nucleus	10.74	31.25
KRG94732	Soybean	nucleus	10.47	31.2
KRH46518	Soybean	nucleus	10.74	28.07
KRH54937	Soybean	nucleus	11.41	27.78
PGSC0003DMT400007199	Potato	nucleus	12.21	27.33
PGSC0003DMT400043852	Potato	nucleus	12.89	26.59
KRG90691	Soybean	nucleus	9.13	25.47
PGSC0003DMT400096938	Potato	nucleus	6.04	24.46
KRG99575	Soybean	nucleus	11.28	24.42
KRH06798	Soybean	cytosol	11.81	24.24
KRH49477	Soybean	nucleus	9.8	22.67
KRH38154	Soybean	nucleus	10.87	22.5
KRG90690	Soybean	cytosol, mitochondrion, nucleus	8.86	22.15
KRH18416	Soybean	nucleus	8.86	21.57
PGSC0003DMT400091092	Potato	nucleus	7.92	19.73
PGSC0003DMT400007200	Potato	cytosol	8.59	19.51
PGSC0003DMT400085817	Potato	nucleus	12.35	17.66
KRH36061	Soybean	golgi, nucleus	9.13	17.57
KRH36062	Soybean	nucleus	7.65	15.53
KRG90687	Soybean	nucleus	9.13	14.98
KRH38192	Soybean	endoplasmic reticulum, golgi	10.6	14.96
KRG90686	Soybean	nucleus	8.59	14.88
VIT_07s0255g00070.t01	Wine grape	nucleus	6.31	13.43
PGSC0003DMT400047299	Potato	nucleus	8.86	12.43

Protein Annotations

EntrezGene:102594229	Gene3D:2.40.330.10	MapMan:35.1	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300	UniProt:M1B5P7	PFAM:PF02362
EnsemblPlantsGene:PGSC0003DMG400014537	PGSC:PGSC0003DMG400014537	EnsemblPlants:PGSC0003DMT400037688	PFscan:PS50863	PANTHER:PTHR31391	PANTHER:PTHR31391:SF45
SMART:SM01019	SUPFAM:SSF101936	UniParc:UPI0002960B56	RefSeq:XP_006350377.1	:	:

Description

DNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400014537]

Coordinates

chr2:-:6706994..6710717

Molecular Weight (calculated)

84899.9 Da

IEP (calculated)

9.692

GRAVY (calculated)

-0.860

Length

745 amino acids

Sequence
(BLAST)

001: MRKRRQTVEM APQFFKIILS PHASKLHIPD EFVIKYGADL RDVVFLEVPT GAIWQVKLLQ NSNGTKWLNH GWNQFKEYYS IAMGYFLLFQ YNGNSHFSVF
101: IFDLSASEIE YLSGPNEDDN NNAKVAHPVS RPNCLAERQE VKLEKPDVEE DLTYATQKHK KKEKNLYNEH CNEVLHPNTT KYNKRKYSLN LEASHRRYPL
201: RSKQVKLEQS KANGSPSYSG KQRPATSLSF PGIQSERKES TRVKLEKANS EEDFCCAVPK AKRGEGNMEK LVKQDRQHNM FDEAHKFKGH CNEAPIVDPS
301: TSKMTTTNQH SKKRTATSLD ASNCRYPLRS KQLKDVKIEK GDVEGRCNEA LVVDPSTSKV TTTNQHSKKR TAASLDASNC RYPLRSKQLK QVKIEKGDVK
401: EHCNKIPVVD PSATKMTTTT RHHEKKTSAS LDTSHCKYPL RNKQLKEVKL EKTNAEEDLL YVAQKAMRKK ANNVKLEKGD VEERSKVGDP SASTTTNQHN
501: EKKTATPLDA SHCRYPLRSK QHIEVKLEQW ETGGNMHNKT PKNKVVADSP YCIRQNLGLP ASSPSYQPVR VKLEKPDNLF CAAEKVKGRE TNNVKLDTGD
601: LEGNLIAASY KGKDSTASEM TVLGKKKMLP SEKHNRDMYF NPHFTVSMQP TCVSRKFQLD IPVEFFKKCL NEEETIVNLR VSNGRSWRAK LLDIQSNCPK
701: MESSGWRDFV LDNNLKEHDT CVFELIDGIE PMLDVTIFRA TTPVS

Best Arabidopsis Sequence Match ( AT3G18990.2 )
(BLAST)

001: MPRPFFHKLI FSSTIQEKRL RVPDKFVSKF KDELSVAVAL TVPDGHVWRV GLRKADNKIW FQDGWQEFVD RYSIRIGYLL IFRYEGNSAF SVYIFNLSHS
101: EINYHSTGLM DSAHNHFKRA RLFEDLEDED AEVIFPSSVY PSPLPESTVP ANKGYASSAI QTLFTGPVKA EEPTPTPKIP KKRGRKKKNA DPEEINSSAP
201: RDDDPENRSK FYESASARKR TVTAEERERA INAAKTFEPT NPFFRVVLRP SYLYRGCIMY LPSGFAEKYL SGISGFIKVQ LAEKQWPVRC LYKAGRAKFS
301: QGWYEFTLEN NLGEGDVCVF ELLRTRDFVL KVTAFRVNDL LEDTGENGSI EGKCIYKIVG GNCGSRHTEV KQ

Arabidopsis Description

VRN1AP2/B3-like transcriptional factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQ83]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.