Factsheet for PGSC0003DMT400085817

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007199	Potato	nucleus	27.06	42.34
PGSC0003DMT400043852	Potato	nucleus	26.68	38.5
PGSC0003DMT400096938	Potato	nucleus	13.05	36.96
KRG94732	Soybean	nucleus	13.44	28.0
KRH46517	Soybean	nucleus	13.24	26.95
PGSC0003DMT400007200	Potato	cytosol	16.12	25.61
KRH54937	Soybean	nucleus	14.4	24.51
KRG99575	Soybean	nucleus	15.74	23.84
KRH46518	Soybean	nucleus	12.86	23.51
KRH06798	Soybean	cytosol	16.12	23.14
KRH38154	Soybean	nucleus	15.55	22.5
KRG90691	Soybean	nucleus	11.13	21.72
KRG90690	Soybean	cytosol, mitochondrion, nucleus	12.28	21.48
KRH36061	Soybean	golgi, nucleus	15.93	21.45
KRH49477	Soybean	nucleus	13.24	21.43
PGSC0003DMT400091092	Potato	nucleus	12.28	21.4
PGSC0003DMT400070034	Potato	cytoskeleton, cytosol, nucleus	9.02	20.61
KRH36062	Soybean	nucleus	14.2	20.16
KRG90687	Soybean	nucleus	17.08	19.6
KRG90686	Soybean	nucleus	15.93	19.3
KRH18416	Soybean	nucleus	10.75	18.3
KRH38192	Soybean	endoplasmic reticulum, golgi	18.23	17.99
VIT_07s0255g00070.t01	Wine grape	nucleus	9.79	14.57
PGSC0003DMT400047299	Potato	nucleus	13.05	12.81
PGSC0003DMT400037688	Potato	nucleus	17.66	12.35

Protein Annotations

Gene3D:2.40.330.10	MapMan:35.1	InterPro:B3_DNA-bd	InterPro:DNA-bd_pseudobarrel_sf	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:IPR003340	InterPro:IPR015300	UniProt:M1DAC2	PFAM:PF02362	EnsemblPlantsGene:PGSC0003DMG400035388
PGSC:PGSC0003DMG400035388	EnsemblPlants:PGSC0003DMT400085817	PFscan:PS50863	PANTHER:PTHR31920	PANTHER:PTHR31920:SF26	SMART:SM01019
SUPFAM:SSF101936	UniParc:UPI000296D924	SEG:seg	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400035388]

Coordinates

chr3:-:5432657..5436773

Molecular Weight (calculated)

59289.5 Da

IEP (calculated)

5.535

GRAVY (calculated)

-0.511

Length

521 amino acids

Sequence
(BLAST)

001: MAASKHESGE VSKAQPKFYK IIVSPQCTSL RIPEDFANRY CKNLAYLEVP SGKVWEVEVV HFEDQICLDK GWLDFVDYHS ISCGHFSMFG YDGCSHFNVT
101: IFDLSATEIE YPPTKNDSDN SIEIDPENHI GHCSFGHASK RKCRDRVEED DISFGNQNNV IEEKESQEEH EQQSEIVPSK NEAEERGEIA INYQTPKLLE
201: VYPESHRGKT KVSDVVERSV ENIGRSFVQA SKRKRQDGGV EEDDDVSVDI QNNVIEEKES QGENEQQSEV ERDEEMALNY QKAKAFKSNN PFIISIMHPS
301: YVSHSFSLSI PKKFAKRYFL NHRNVVLSVT GKGSWSVKCT IGTKNAKFSW KALVLDNKLK TGDVCVFKVI EGTMPVSINV IIFPAVFNTS KHAEVVSDSE
401: DPCSQYISAD YQRAKAFTSE NPFFIRVMQS SYVSGNSLNI PRVIGWEIFS AKRSDLVLQV PSKRSWTLKC NRAKEYAKLT LGWKEFVFDN NIKVGDVCVF
501: EQVNRSNLLF NVYIFPAEEN V

Best Arabidopsis Sequence Match ( AT3G18990.1 )
(BLAST)

001: MPRPFFHKLI FSSTIQEKRL RVPDKFVSKF KDELSVAVAL TVPDGHVWRV GLRKADNKIW FQDGWQEFVD RYSIRIGYLL IFRYEGNSAF SVYIFNLSHS
101: EINYHSTGLM DSAHNHFKRA RLFEDLEDED AEVIFPSSVY PSPLPESTVP ANKGYASSAI QTLFTGPVKA EEPTPTPKIP KKRGRKKKNA DPEEINSSAP
201: RDDDPENRSK FYESASARKR TVTAEERERA INAAKTFEPT NPFFRVVLRP SYLYRGCIMY LPSGFAEKYL SGISGFIKVQ LAEKQWPVRC LYKAGRAKFS
301: QGWYEFTLEN NLGEGDVCVF ELLRTRDFVL KVTAFRVNEY V

Arabidopsis Description

VRN1AP2/B3-like transcriptional factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQ83]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.