Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g034190.1.1 | Tomato | cytoskeleton, cytosol, nucleus | 7.14 | 25.77 |
| PGSC0003DMT400096938 | Potato | nucleus | 11.14 | 21.2 |
| Solyc04g015500.2.1 | Tomato | cytosol | 11.71 | 18.89 |
| KRH46518 | Soybean | nucleus | 14.29 | 17.54 |
| Solyc03g042500.1.1 | Tomato | mitochondrion | 9.71 | 16.75 |
| PGSC0003DMT400070034 | Potato | cytoskeleton, cytosol, nucleus | 10.86 | 16.67 |
| KRG90691 | Soybean | nucleus | 12.29 | 16.1 |
| KRH46517 | Soybean | nucleus | 11.71 | 16.02 |
| VIT_03s0063g01450.t01 | Wine grape | nucleus | 16.0 | 15.77 |
| KRG94732 | Soybean | nucleus | 11.14 | 15.6 |
| KRG99575 | Soybean | nucleus | 15.14 | 15.41 |
| Solyc03g042510.1.1 | Tomato | nucleus | 8.29 | 15.03 |
| Solyc02g065350.2.1 | Tomato | mitochondrion | 13.71 | 14.5 |
| KRH54937 | Soybean | nucleus | 12.57 | 14.38 |
| Solyc03g044110.1.1 | Tomato | nucleus | 12.86 | 13.93 |
| KRG90690 | Soybean | cytosol, mitochondrion, nucleus | 11.71 | 13.76 |
| PGSC0003DMT400007199 | Potato | nucleus | 12.86 | 13.51 |
| KRH38154 | Soybean | nucleus | 13.71 | 13.33 |
| KRH06798 | Soybean | cytosol | 13.71 | 13.22 |
| PGSC0003DMT400043852 | Potato | nucleus | 13.43 | 13.02 |
| Solyc03g043580.1.1 | Tomato | cytosol | 12.0 | 13.0 |
| Solyc03g043570.1.1 | Tomato | cytosol | 4.86 | 12.78 |
| KRH18416 | Soybean | nucleus | 11.14 | 12.75 |
| PGSC0003DMT400007200 | Potato | cytosol | 11.71 | 12.5 |
| PGSC0003DMT400091092 | Potato | nucleus | 10.57 | 12.37 |
| Solyc01g015210.1.1 | Tomato | nucleus | 10.0 | 12.32 |
| KRH36062 | Soybean | nucleus | 12.86 | 12.26 |
| KRH36061 | Soybean | golgi, nucleus | 12.86 | 11.63 |
| KRH49477 | Soybean | nucleus | 10.57 | 11.49 |
| Solyc11g045450.1.1 | Tomato | cytosol | 9.14 | 10.77 |
| KRG90686 | Soybean | nucleus | 13.14 | 10.7 |
| KRG90687 | Soybean | nucleus | 13.14 | 10.13 |
| PGSC0003DMT400085817 | Potato | nucleus | 14.57 | 9.79 |
| KRH38192 | Soybean | endoplasmic reticulum, golgi | 14.0 | 9.28 |
| Solyc08g029090.2.1 | Tomato | nucleus | 13.14 | 7.88 |
| PGSC0003DMT400037688 | Potato | nucleus | 13.43 | 6.31 |
| Solyc02g021260.1.1 | Tomato | nucleus, plasma membrane | 9.43 | 2.51 |
Protein Annotations
| Gene3D:2.40.330.10 | MapMan:35.1 | InterPro:B3_DNA-bd | ProteinID:CCB62852 | ProteinID:CCB62852.1 | InterPro:DNA-bd_pseudobarrel_sf |
| UniProt:F6I7D4 | EMBL:FN596776 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003340 |
| InterPro:IPR015300 | PFAM:PF02362 | PFscan:PS50863 | PANTHER:PTHR31920 | PANTHER:PTHR31920:SF26 | SMART:SM01019 |
| SUPFAM:SSF101936 | UniParc:UPI0002109EA0 | ArrayExpress:VIT_07s0255g00070 | EnsemblPlantsGene:VIT_07s0255g00070 | EnsemblPlants:VIT_07s0255g00070.t01 | : |
Description
No Description!
Coordinates
chr7:+:14390937..14392515
Molecular Weight (calculated)
39432.7 Da
IEP (calculated)
5.448
GRAVY (calculated)
-0.303
Length
350 amino acids
Sequence
(BLAST)
(BLAST)
001: MFLKVPSGAV WQVGLKRGDG EVWLDGGWRE FVEYYSIGYG HFLVFRYEGN SIFHILIFDM TASEIEYPST NAPHYEEPSS NIGGSLPPKM EEIDNDVSVE
101: ILDVFPARQT TKEKDTINIS SSEEEFTPCL PEIVEIESDV SVGTFDVFPT SQNPEEKEVR LFFSPLEKKH NSSRKTDTPP MSDLLFHISA QRIGHDFHAK
201: ESCGTVAAIQ RNVLSGVLPP VTASKEVGAL QRAIAFNPEN PFFRAKMGPS YLGPSRHGLN IPIWFVERYF KTDDKSITLW GSDGRTWSTS YRLGRRRNGK
301: RVAELLYSGW KIFVQDNQLK LGDVCVFVLI KSPGILLKVV IFGNSEDADH
101: ILDVFPARQT TKEKDTINIS SSEEEFTPCL PEIVEIESDV SVGTFDVFPT SQNPEEKEVR LFFSPLEKKH NSSRKTDTPP MSDLLFHISA QRIGHDFHAK
201: ESCGTVAAIQ RNVLSGVLPP VTASKEVGAL QRAIAFNPEN PFFRAKMGPS YLGPSRHGLN IPIWFVERYF KTDDKSITLW GSDGRTWSTS YRLGRRRNGK
301: RVAELLYSGW KIFVQDNQLK LGDVCVFVLI KSPGILLKVV IFGNSEDADH
001: MPRPFFHKLI FSSTIQEKRL RVPDKFVSKF KDELSVAVAL TVPDGHVWRV GLRKADNKIW FQDGWQEFVD RYSIRIGYLL IFRYEGNSAF SVYIFNLSHS
101: EINYHSTGLM DSAHNHFKRA RLFEDLEDED AEVIFPSSVY PSPLPESTVP ANKGYASSAI QTLFTGPVKA EEPTPTPKIP KKRGRKKKNA DPEEINSSAP
201: RDDDPENRSK FYESASARKR TVTAEERERA INAAKTFEPT NPFFRVVLRP SYLYRGCIMY LPSGFAEKYL SGISGFIKVQ LAEKQWPVRC LYKAGRAKFS
301: QGWYEFTLEN NLGEGDVCVF ELLRTRDFVL KVTAFRVNEY V
101: EINYHSTGLM DSAHNHFKRA RLFEDLEDED AEVIFPSSVY PSPLPESTVP ANKGYASSAI QTLFTGPVKA EEPTPTPKIP KKRGRKKKNA DPEEINSSAP
201: RDDDPENRSK FYESASARKR TVTAEERERA INAAKTFEPT NPFFRVVLRP SYLYRGCIMY LPSGFAEKYL SGISGFIKVQ LAEKQWPVRC LYKAGRAKFS
301: QGWYEFTLEN NLGEGDVCVF ELLRTRDFVL KVTAFRVNEY V
Arabidopsis Description
VRN1AP2/B3-like transcriptional factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQ83]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.